Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1537 ATGCCAACCAATGGTTCAACGTCCGCCCCTTCACAAGGATCGATCACAGCCGCGGCCGCCAATGCCATGCCGTCCGTTCACCAAATTCCAAAGCTCCCAGAAATTTATGCTAATTCCAATGCCAATTTTAGATCCTCTCTCTCTTTGGTTCCTTTGGGAGGGCTCAATCCACGCGCTCCTTGCTGCGCGCGGGCTTTAACGACTCTAAACGTGTCAAAGCAATTTGCTACCAATACACGACTCTCTTCGCTTCCTCCTCCACTTAGAGCCTTTTCGCGACCTTCTTCTTCTTCTGTTGTTTGCTCTTCTTCTCGCTTTTCAGATATGGACGCTTCAGGAGGTGTAAGTTTGTATCCTTCGCACCGTACTAAAACTATTCATCTGGTGAGGCATGCCCAGGGATTTCATAATGTGGCAGGAGAGAAGGACGTGAATGAATATCTATCTTTTGATTACTTTGATGCTCAACTTACCTCTTTAGGATGGAAACAGGTTGGCAATCTGCGGAAACATGTACAAGCATGTGGACTTTCTAAGAGAATTGAGTTAGTTATCACTTCCCCATTGTTCAGGACCATGGAAACCGCGGTTGGAACATTCGGTGGTGAAGGTTATTCGGATGGTACAAATGTTCCTCCATTAATGGTAGCAAATGCAGGAGATTGCAACCGCCCTGCAATTTCAAGTTTGAATTGCCCGCCATTTGTGGCAGTAGAGCTTTGTCGGGAACATTTGGGCGTTCATCCTTGTGACAAGAGGCGAAGTATTAGTGAGTATCGGTCTCTTTTCCCTGCGATTGATTTTTCAATGATTGAACATGATGAAGATACCCTGTGGAAGCCAGACATCAGAGAGACCAACGATGAAGTAGCAGAGAGGGGACTGAAGTTTCTTAAATGGCTCTGGACCCGGAAGGAAAAGGAGATCGCAGTTGTCAGCCACAGTGGATTCTTATTTCATGCGTTGAGTGCATTTGGAAATGACTGTCGTCCGTTTATAAAGGATGAAATCTGCAAACATTTTGCCAATTGTGAGCTTCGTTCCTTCGTTCTTGTTGATAGGAGCATGATCGGGTCAGAATCCTCAACGACCAATTTCCCGGGCGGTTTACCGAAAGGGATTGATCTTCCCAGTGATGTTGCAGCCAGCTGA 1152 46.27 MPTNGSTSAPSQGSITAAAANAMPSVHQIPKLPEIYANSNANFRSSLSLVPLGGLNPRAPCCARALTTLNVSKQFATNTRLSSLPPPLRAFSRPSSSSVVCSSSRFSDMDASGGVSLYPSHRTKTIHLVRHAQGFHNVAGEKDVNEYLSFDYFDAQLTSLGWKQVGNLRKHVQACGLSKRIELVITSPLFRTMETAVGTFGGEGYSDGTNVPPLMVANAGDCNRPAISSLNCPPFVAVELCREHLGVHPCDKRRSISEYRSLFPAIDFSMIEHDEDTLWKPDIRETNDEVAERGLKFLKWLWTRKEKEIAVVSHSGFLFHALSAFGNDCRPFIKDEICKHFANCELRSFVLVDRSMIGSESSTTNFPGGLPKGIDLPSDVAAS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29635990 29640710 - CePI673135_11g015370.1 Cec11g1537 216749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1537 383 SMART PGAM_5 125 321 IPR013078 -
Cec11g1537 383 FunFam Phosphoglycerate mutase-like protein 1 120 367 - -
Cec11g1537 383 Gene3D - 118 368 IPR029033 -
Cec11g1537 383 SUPERFAMILY Phosphoglycerate mutase-like 123 354 IPR029033 -
Cec11g1537 383 CDD HP_PGM_like 125 196 IPR013078 -
Cec11g1537 383 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 120 351 IPR050275 GO:0005737(PANTHER)|GO:0016791(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1537 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0994 Cec-Chr10:22436011 Cec11g1537 Cec-Chr11:29635990 6.20E-119 dispersed
Cec11g1536 Cec-Chr11:29626149 Cec11g1537 Cec-Chr11:29635990 1.70E-120 tandem
Cec11g1537 Cec-Chr11:29635990 Cec11g1538 Cec-Chr11:29643849 4.90E-145 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g558 . . . . Bpe02g00151 . . Bma01g02575 . . . Cma09g00605 . . . Cpe06g00466 . . . . . . . . . . . . . . . Cone4ag1277 Cone7ag0874 . . Lsi04g02298 Csa03g04517 Chy04g00186 . . . Bda11g00812 . . Bpe05g00448 . . Sed05g1536 . Cmo09g00593 . . . Car09g00537 . . Bhi09g02533 Tan01g3880 Cmetu04g2852 . Hepe01g2188 Mch11g0734 . Cla11g01447 Cam11g1500 Cec11g1537 Cco11g1533 Clacu11g1664 Cmu11g1480 Cre11g1900 . . . Cme04g00216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113