Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1540 ATGGAGTTGAATGAAAACTATTTGTTAGAGGAAGCTTTAGGTGTGAGAAGAGAAATGAATTGGGAATTAGCAATGTCTATGGAAATGAATGAGTTAATTTGTAGTGCAAATGGGTGGAATTTCGATTGCTCTGATTCTTCAGCAATGGATCAGCACAATCTTAATTATCTTCTCGGTGGGCAAGGTCAGTACTGTTTGCCTACGGCGGGGGGGAGTACCGGCGATTCAATGTTGGAGACGCCGCCGAGTAGTTTTGAGGTTTATAATGGGGAATATCCGATTACGAGTATGGAAGAGGAGGAACTTGGAATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCTAATTATTGTAAAGTTGAGGCTAATGTTGAATCTCCTATCCCCATTTTCAACACAGGTGGCACGTGCGACGATTTTCCCAAACAAAAAATCGTCAATTACTCGTGTACTAAGAAGCTTCAGGGACAGCCGTCCAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGTCTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACCGCGATTCTGGCCGATGCAATTGAGTACGTGAAGGAACTGATGGAGAAAATTAAGAAGTTGGAAAGGGAAATTGAGGTGAATAATAATAATAATCCGAATAAGTTGGGGATTATGAGAGATGTGAAACCAAATAATGAATATTTGGTGAGAAATTCACCCAAGTTTAATGTGGAAAGAAGAGAAGATGACACAAGGATTGAGATTTGTTGTGCAGCAAAGCCAGGGTTATTATTGTCAACAGTGCACACTCTTGAAACATTGGGGCTTGATATTCAGCAGTGTGTTATTAGCTGTTTCAGTGACTTTGCAATGCAAGCTTCTTGTTCTGAGGGAAGCGAGCAGAGAACAATAGTGAGCACTGAAGAAGTAAAGCAAGCATTATTTGAAAATGCTGGCTATGGAGGAAAATGCTTGTAG 996 41.67 MELNENYLLEEALGVRREMNWELAMSMEMNELICSANGWNFDCSDSSAMDQHNLNYLLGGQGQYCLPTAGGSTGDSMLETPPSSFEVYNGEYPITSMEEEELGILEDEIHNLEVQANYCKVEANVESPIPIFNTGGTCDDFPKQKIVNYSCTKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMEKIKKLEREIEVNNNNNPNKLGIMRDVKPNNEYLVRNSPKFNVERREDDTRIEICCAAKPGLLLSTVHTLETLGLDIQQCVISCFSDFAMQASCSEGSEQRTIVSTEEVKQALFENAGYGGKCL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29671983 29674451 + CePI673135_11g015400.1 Cec11g1540 216752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1540 331 Coils Coil 196 223 - -
Cec11g1540 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983(InterPro)
Cec11g1540 331 Pfam Helix-loop-helix DNA-binding domain 164 206 IPR011598 GO:0046983(InterPro)
Cec11g1540 331 Gene3D - 152 224 IPR036638 GO:0046983(InterPro)
Cec11g1540 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 222 IPR036638 GO:0046983(InterPro)
Cec11g1540 331 Pfam Plant bHLH transcription factor, ACT-like domain 249 320 IPR054502 -
Cec11g1540 331 SMART finulus 163 212 IPR011598 GO:0046983(InterPro)
Cec11g1540 331 CDD ACT_UUR-ACR-like 257 298 - -
Cec11g1540 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 138 326 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec11g1540 331 Coils Coil 95 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1432 Cec-Chr5:16729218 Cec11g1540 Cec-Chr11:29671983 3.50E-32 dispersed
Cec11g1209 Cec-Chr11:25188406 Cec11g1540 Cec-Chr11:29671983 1.80E-12 dispersed
Cec03g0384 Cec-Chr3:4303182 Cec11g1540 Cec-Chr11:29671983 3.30E-33 transposed
Cec11g1540 Cec-Chr11:29671983 Cec04g1513 Cec-Chr4:34660382 3.20E-68 wgd
Cec11g1540 Cec-Chr11:29671983 Cec08g1223 Cec-Chr8:24160848 4.90E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30557 PF00010 HLH 5.70E-10 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1540 - - - 0.0