Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1547 ATGTCGTCTCTACATTTTCTCTACTTTTTCTCTCTAATTTCCATCGCCTTTCTCCCTGGAATCAAATCTGACGACGAACGTCAAATCCTAACCAAACTCAAATCCTCACTCCAAAATTCAAACGCCAATGTCTTCCACAACTGGGGATTTCAAGATCCCATCTGCAATTTCACCGGAATCGCTTGTAATTCAGATGGGTTTGTTAAGGAAATTGACCTATCCAAACGGGGTTTATCTGGGATTGTTCCGTTTGATTCCCTTTGCCAATTGCAAGCCTTGGAGAAGTTGGCTCTTCGGTCTAATTCCCTGCACGGTGAAATCACAGAGGGTTTGAATAATTGTGTGAAATTGAAGTATTTGGATCTCAGCAGCAATTCCTTCTCTGGTTCTTTTCCCAACATACATTCTTTGAGTGAATTGGAGTATTTGTATTTGAATGTAAGTGGGATTTCAGGGAAGTTTCCATGGAAATCAGTTGGGAATTTGAGTGGTTTGATAGAGTTGAGTGTTGGGGATAACACTTTTGAAAACACTACGTTTCCTGTGGAGGTTACTAATTTGAAGAAGCTTAATTGGCTTTACTTGTCAAACTGCAGCTTAACAGGGGAAATTCCAAGGTCTATAGGTAATCTCACACAGCTTCTTAATTTGGAATTTTCGGATAATTATATAACAGGGACTATTCCGCCGGAGATTGCCAACCTGCAGAAGCTATGGCAGTTGGAATTCTACGGTAATCAATTAACGGGGACACTTCCAGTGGGATTAAGAAATCTAACCGGGCTTAAGAATTTTGATGCTTCCTTGAATCAAATTCATGGGGATTTATCAGAGTTGAGGTTTTTGACGAACCTGGTTTCTCTGCAAATGTTTGAAAATCAAATCTCCGGCGAAATTCCGGTGGAGTTTGGTGAATTCAAGTCGCTGGTGAATCTCTCCCTTTACAAGAATAAGCTTACAGGGCCTCTTCCGCAATCTATTGGTTCTTGGACGGAGTTTGATTTTATTGATGTATCTGAAAATTTCTTGACGGGGCCGATTCCTCCTGATATGTGCAAGAAGGGGACGATGCAGAAGCTTCTCATTCTTCAGAACAATTTTACCGGTGAAATTCCGGCAACCTACGCTAACTGCTCCACTTTAACCCGATTTAGAGTCAGTCAGAACTCGCTCACCGGAGTCGTTCCGTCTGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGCCTCGAATCAGTTGGAAGGTTCAATCACTCCCAACATTGGAAAGGCCGTGGCTCTCTCGGAATTATACATCAGAAATAATCGATTCTCAGGTCGACTGCCAACGGAGATTTCGCAAGCAAAATCTCTCGCTTCGGTTGACCTGAGCAATAATCAATTCACCGATGAACTTCCGATGACTATCGGCGACCTGAAGAATCTTGATAGCTTCGAATTGCAGGGGAATAAATTCTCCGGTTCGATTCCAGAGACGATCGGCTTGTGTAATTCCTTGAGCATCATCAATCTGGCGGATAATTTCTTCTCTGGACAAATCCCTTCGTCGCTAGGGTTTCTTCCGGTTCTAAACTCTTTGAATCTCTCCAATAACGGCCTATCGGGTGAAATCCCCTCGACGTTTTCGCATCTGAAATTGAGTTTTCTCGATCTTTCCAACAATCAATTAACCGGTCCAGTACCTCAAGCGCTCTCGAATGGAGCTTACAAAGAAAGCTTTGCCGGAAACCCTGGCCTCTGCAGTGAGGCCGATGACTTTATACGGCGATGTTCACAGAGTTCCGGCGCGTCGAAGGACGTCAAAACACTTGTCATCTGTTTCGCCGTCGGATTAATCCTTCTCAGTGTGACGCTGTGGTGCTTCATAACCTTGAAAAAGAGCAGAAAAGATCGAGATCGATCGCTTAAAGAAGAATCGTGGGACCTAAAATCGTTCCACGTAATGACGTTCACAGAGGACGAGATACTCGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTACAAAGTGACTGTCGGAAACGGAAAAGAATTCGCCGTGAAGCACATTTGGAACACTAATCCGTACGAAGGGAAGAAGAAGAATTACCGTAGTTCATCGCCGATTCTGGTGAAACAGAGAACGAAGTCATCGGAATTTGAGTCGGAAGTGAAGACTCTAAGCTCGATCCGCCACGTGAACGTGGTGAAGCTGTACTGCAGCATCACGAGCGAGGTTTCAAGCCTGTTGGTGTACGAATACATGCCGAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACAAGATACGAAATCGCCGTGGGAGCGGCGAAGGGACTGGAGTATCTTCATCACGGTTGTGACCGGCCGGTGATCCACCGGGATGTTAAGTCGAGTAACATACTTTTGGATGAATTTCTGAAGCCGAGAATCGCGGATTTTGGGCTTGCCAAAATTCTTCACACAACTGGGTTCAACGAGACCACCCATGTCATTGCCGGCACCCCGGGCTACATCGCACCAGAGTATGGATACACTTACAAAGTCGATGAGAAGAGCGACGTGTACAGTTTTGGAGTGGTATTGATGGAGTTAGTGAGTGGGAAAAAGGCAATAGAGGCTGAGTTTGGAGAGAACAAGGAGATCGTACAATGGGTATCAAACAATTTGAAGACAAGAGAAAGTGTATTAAGCTTAGTAGATTCAAGAATTCCAGATGTATTTAAAGAGGATGCAATAAAGGTATTAAGAATTGCAATTTTGTGCACAGCAAGACTTCCCACTTTGAGACCCACAATGAGAAGTGTCGTTCAAATGCTCGAAGAAGCTCAACCTTGTCGGTTGCTTGGGATTCTCATTACCAAAGATGGCGGGACTGTTAAAAAGGAATTATCTTTGGACGTCAATAAAATTAGTCTCTAA 2949 43.95 MSSLHFLYFFSLISIAFLPGIKSDDERQILTKLKSSLQNSNANVFHNWGFQDPICNFTGIACNSDGFVKEIDLSKRGLSGIVPFDSLCQLQALEKLALRSNSLHGEITEGLNNCVKLKYLDLSSNSFSGSFPNIHSLSELEYLYLNVSGISGKFPWKSVGNLSGLIELSVGDNTFENTTFPVEVTNLKKLNWLYLSNCSLTGEIPRSIGNLTQLLNLEFSDNYITGTIPPEIANLQKLWQLEFYGNQLTGTLPVGLRNLTGLKNFDASLNQIHGDLSELRFLTNLVSLQMFENQISGEIPVEFGEFKSLVNLSLYKNKLTGPLPQSIGSWTEFDFIDVSENFLTGPIPPDMCKKGTMQKLLILQNNFTGEIPATYANCSTLTRFRVSQNSLTGVVPSGIWGLPNVNIIDLASNQLEGSITPNIGKAVALSELYIRNNRFSGRLPTEISQAKSLASVDLSNNQFTDELPMTIGDLKNLDSFELQGNKFSGSIPETIGLCNSLSIINLADNFFSGQIPSSLGFLPVLNSLNLSNNGLSGEIPSTFSHLKLSFLDLSNNQLTGPVPQALSNGAYKESFAGNPGLCSEADDFIRRCSQSSGASKDVKTLVICFAVGLILLSVTLWCFITLKKSRKDRDRSLKEESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTNPYEGKKKNYRSSSPILVKQRTKSSEFESEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHTTGFNETTHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIEAEFGENKEIVQWVSNNLKTRESVLSLVDSRIPDVFKEDAIKVLRIAILCTARLPTLRPTMRSVVQMLEEAQPCRLLGILITKDGGTVKKELSLDVNKISL 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29759261 29762917 + CePI673135_11g015470.1 Cec11g1547 216759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1547 982 FunFam Receptor-like protein kinase HSL1 284 591 - -
Cec11g1547 982 FunFam Leucine-rich receptor-like protein kinase family protein 183 278 - -
Cec11g1547 982 Gene3D Ribonuclease Inhibitor 135 352 IPR032675 -
Cec11g1547 982 Gene3D Ribonuclease Inhibitor 24 134 IPR032675 -
Cec11g1547 982 Pfam Leucine Rich Repeat 116 133 IPR001611 GO:0005515(InterPro)
Cec11g1547 982 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515(InterPro)
Cec11g1547 982 Pfam Leucine Rich Repeat 429 448 IPR001611 GO:0005515(InterPro)
Cec11g1547 982 Pfam Leucine Rich Repeat 500 522 IPR001611 GO:0005515(InterPro)
Cec11g1547 982 Pfam Leucine Rich Repeat 547 568 IPR001611 GO:0005515(InterPro)
Cec11g1547 982 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Cec11g1547 982 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515(InterPro)
Cec11g1547 982 Pfam Leucine Rich Repeat 452 474 IPR001611 GO:0005515(InterPro)
Cec11g1547 982 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515(InterPro)
Cec11g1547 982 Gene3D Ribonuclease Inhibitor 353 600 IPR032675 -
Cec11g1547 982 SMART serkin_6 661 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1547 982 Gene3D Transferase(Phosphotransferase) domain 1 756 956 - -
Cec11g1547 982 FunFam Receptor-like protein kinase HAIKU2 644 755 - -
Cec11g1547 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 952 IPR050647 -
Cec11g1547 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec11g1547 982 SUPERFAMILY RNI-like 317 568 - -
Cec11g1547 982 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524(InterPro)
Cec11g1547 982 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cec11g1547 982 Gene3D Phosphorylase Kinase; domain 1 644 755 - -
Cec11g1547 982 ProSiteProfiles Protein kinase domain profile. 661 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1547 982 SUPERFAMILY L domain-like 36 364 - -
Cec11g1547 982 Pfam Protein kinase domain 663 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1547 982 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 756 959 - -
Cec11g1547 982 SUPERFAMILY Protein kinase-like (PK-like) 651 950 IPR011009 -
Cec11g1547 982 FunFam Probable inactive receptor kinase RLK902 23 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0784 Cec-Chr10:12784637 Cec11g1547 Cec-Chr11:29759261 2.00E-73 dispersed
Cec10g0788 Cec-Chr10:12939079 Cec11g1547 Cec-Chr11:29759261 1.40E-74 dispersed
Cec11g1547 Cec-Chr11:29759261 Cec04g2035 Cec-Chr4:38457804 5.20E-82 dispersed
Cec11g1547 Cec-Chr11:29759261 Cec11g1548 Cec-Chr11:29777168 3.10E-95 tandem
Cec02g0768 Cec-Chr2:8667928 Cec11g1547 Cec-Chr11:29759261 7.60E-158 transposed
Cec11g1547 Cec-Chr11:29759261 Cec08g1233 Cec-Chr8:24279053 8.50E-85 wgd
Cec11g1547 Cec-Chr11:29759261 Cec09g0031 Cec-Chr9:317210 7.30E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72421 PF00069 Pkinase 2.50E-43 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1547 - - - 0.0