Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1548 ATGCCTCTCCCTTTCTACTTCTTCTTTCTTCAATCTTTCCTTTCTCTTGCCATTGGAACTGACCAGTTTCAATTTTTCTCTTTCATGCAAAAGGGTGTCATCGGGAATTCTCTCCCCTCCGATTGGACTGGAAATTCCTTCTGTAATTTCACCGGAGTTAGCTGTAACCAAAAGGGGTTAGTGGTCGGAATTGATCTCTCTGGCAGGGCGGTTTCCGGGAGGTTTCCGGCGGATGTTTGTTCTTATTTGCCGGAGTTGAGAGTGCTGCGGCTTGGACGGAGTGGCTTTCGTGGAACCTTTCCACGTGGGATAACCAATTGCTCTGTTTTGGAAGAATTGGATATGAGTTTTCTGTCACTGACGGGGACGTTACCGGATTTCTCGCCGTTGAAAACCTTGAGGATTCTCGACATGTCGTACAATAATTTCACCGGTGAATTCCCCTTGTCGGTTTTCAGTTTAACCAATCTCGAGAAGTTGAATTTCAACGAGGACAACAATTTCAATACGTGGCAGTTGCCGGAGAATGTGTCCGGCTTGACGAAGTTGAAATCCATGGTGTTAACGACTTGTATGCTGGAGGGTCGAATTCCGGCGACGATTGGGAATATGACGGCGCTCGTGGACCTTGAATTAAGCGGCAATTTCCTCACCGGAAAAATCCCAAGAGAAATCGGGAATTTGAAGAATTTGAGACAGTTGGAGCTTTATTACAATTCATTAGTCGGAGAAATTCCAGAGGAACTTGGGAATTTAACAGAGCTCGTGGACTTGGACATGTCGGTCAACAAGTTGACTGGGAAACTTCCAGAGTCGATTTGTCGTCTTCCTAAGCTAGAAGTTCTTCAATTTTACAACAACTCATTAACAGGGGAGATTCCAATTTCAATTTCAAATTCAACGACACTCACTATGTTATCCCTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAATTCTCTCCCATGGTGGTTCTCGACTTGTCGGAAAATTATTTCTCCGGTCCTTTACCGACAGATGTCTGTGGAGAAGGTAAATTAATGTATTTCCTTGTGTTGGAAAATAAATTTTCCGGTCAAATCCCACCGTCGTACGGTAAATGCCAATCCCTTTTACGGTTTCGAGTCAGTTCGAATATTTTGGAAGGTCCGGTGCCGGTGGGACTTTTGAGTCTTCCTCATGTTTCGATTATTGATTTCGGTAACAATAATTTGAGTGGCGAAATTCCCAATTCTTTTGTTAAAGCGAGGAATCTTTCGGAATTGTTTATGCAGAGTAATAGAATTTCTGGCGTGTTGCCGCCGGAAATTTCTAAAGCTACCAATTTAGTTAAGATTGATCTTAGCAACAATCTCTTGTCTGGTCCAATTCCTTCCGAAATTGGGAATCTCAGAAAGCTTAATTTGTTGCTTTTGCAAGGAAATCACTTGAATTCTTCAATACCCACCTCGCTTTCTGAGCTTAAATCTCTTAATGTTCTTGATTTATCAGATAATCGATTAACGGGTAACATCCCAGAAAGTCTCTGTGAATTGCTACCGAATTCAATCAATTTCTCAAACAATCAACTCTCTGGTCCAATTCCTCTGTCTTTAATCAAAGGTGGATTAGTGGAAAGCTTTTCCGGCAACCCTGGACTTTGCGTTTCGGTTTATTTAGATTCATCAGATCAGAAATTCCCAATTTGTTCTCAAAATTTCAACAAAAAGCGATTGGATTCCATCTGGGCAATCGGAATATCGGCGTTCATAATCTTCATCGGAGCTGCTCTGTATTTAAGACGACGATTCAGCAGAGAAAAATCGATAATGGAACAAGACGAAACACTATCTTCATCGTTCTTCTCATACGATGTGAAAAGTTTCCATCGAATCAGCTTTGACCCAAGAGAAATAATCGAATCAATGGTGGATAAGAACATCGTCGGCCATGGCGGCTCCGGTACGGTGTACAAAATAGAGTTAAGCAGTGGGGAAATCGTAGCCGTTAAAAGGCTGTGGAGTCGAAGGGGGAAAGATACAACGTCGGATCAAGAACAGTTGTATTTGGACAAAGAACTGAAAACAGAGGTGGAAACATTAGGGAGTATAAGGCATAAAAACATAGTGAAATTGTATTGCTATTTCTCAAGCTTGGATTGCAGTTTATTGGTTTATGAGTATATGCCAAATGGGAATTTATGGGATGCTTTGCATAAGGGTTGGATTCATTTGGATTGGCCAACTAGACATCAAATTGCTTTGGGTATAGCCCAAGGCTTGGCTTACCTTCATCATGATTTGTTGCCTTCTATAATCCATAGAGACATTAAAACCACTAATATTCTCTTAGATGTCAATTATCATCCCAAAGTTGCCGATTTTGGTATTGCTAAGGTTTTGCAAGCTAGAACGGGCAAGGATTCTACCACCACCATCATCGCCGGTACTTACGGCTATCTCGCTCCAGAGTATGCATATTCGTCGAAAGCTACTACAAAGTGCGACGTGTACAGCTTTGGAATCGTGCTGATGGAGCTAATAACAGGAAAGAAACCGGTGGAGGCAGAGTTTGGGGAGAACAAGAACATCATATATTGGGTTTCAAACAAAGTAGACACAAAGGAAGGAGCAATGGAAGTATTAGACAAAAGAGTTTCAGGGTCATTCAAAGATGAGATGATTGAAGTTCTAAGGATTGCAATTCGTTGTACGTACAAGAATCCAGCCCTTAGACCCACCATGAAGGAAGTGGTTCAACTATTGATTGAAGCTGACCCTTGCAAATTCGATTCTCACAACAAATGCTCCAAACACACCACCACCAAGATCAACAACCCATTTGACCTATGA 2844 41.88 MPLPFYFFFLQSFLSLAIGTDQFQFFSFMQKGVIGNSLPSDWTGNSFCNFTGVSCNQKGLVVGIDLSGRAVSGRFPADVCSYLPELRVLRLGRSGFRGTFPRGITNCSVLEELDMSFLSLTGTLPDFSPLKTLRILDMSYNNFTGEFPLSVFSLTNLEKLNFNEDNNFNTWQLPENVSGLTKLKSMVLTTCMLEGRIPATIGNMTALVDLELSGNFLTGKIPREIGNLKNLRQLELYYNSLVGEIPEELGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQFYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENYFSGPLPTDVCGEGKLMYFLVLENKFSGQIPPSYGKCQSLLRFRVSSNILEGPVPVGLLSLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFMQSNRISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLRKLNLLLLQGNHLNSSIPTSLSELKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDQKFPICSQNFNKKRLDSIWAIGISAFIIFIGAALYLRRRFSREKSIMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELSSGEIVAVKRLWSRRGKDTTSDQEQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARTGKDSTTTIIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSGSFKDEMIEVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSHNKCSKHTTTKINNPFDL 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29777168 29780439 + CePI673135_11g015480.1 Cec11g1548 216760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1548 947 FunFam Leucine-rich repeat receptor-like protein kinase 170 272 - -
Cec11g1548 947 Gene3D Ribonuclease Inhibitor 168 262 IPR032675 -
Cec11g1548 947 Gene3D Ribonuclease Inhibitor 263 353 IPR032675 -
Cec11g1548 947 Gene3D Phosphorylase Kinase; domain 1 623 725 - -
Cec11g1548 947 SMART LRR_typ_2 276 300 IPR003591 -
Cec11g1548 947 SMART LRR_typ_2 130 154 IPR003591 -
Cec11g1548 947 SMART LRR_typ_2 492 516 IPR003591 -
Cec11g1548 947 SMART LRR_typ_2 228 252 IPR003591 -
Cec11g1548 947 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515(InterPro)
Cec11g1548 947 Pfam Leucine Rich Repeat 446 468 IPR001611 GO:0005515(InterPro)
Cec11g1548 947 Pfam Leucine Rich Repeat 278 299 IPR001611 GO:0005515(InterPro)
Cec11g1548 947 Pfam Leucine Rich Repeat 133 153 IPR001611 GO:0005515(InterPro)
Cec11g1548 947 Pfam Leucine Rich Repeat 255 276 IPR001611 GO:0005515(InterPro)
Cec11g1548 947 Pfam Leucine Rich Repeat 422 443 IPR001611 GO:0005515(InterPro)
Cec11g1548 947 Pfam Leucine Rich Repeat 494 516 IPR001611 GO:0005515(InterPro)
Cec11g1548 947 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515(InterPro)
Cec11g1548 947 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515(InterPro)
Cec11g1548 947 Pfam Protein kinase domain 643 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1548 947 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524(InterPro)
Cec11g1548 947 FunFam receptor protein-tyrosine kinase CEPR1 623 725 - -
Cec11g1548 947 SUPERFAMILY L domain-like 245 560 - -
Cec11g1548 947 Gene3D Ribonuclease Inhibitor 354 562 IPR032675 -
Cec11g1548 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec11g1548 947 SMART serkin_6 640 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1548 947 Gene3D Ribonuclease Inhibitor 24 167 IPR032675 -
Cec11g1548 947 Gene3D Transferase(Phosphotransferase) domain 1 726 941 - -
Cec11g1548 947 ProSiteProfiles Protein kinase domain profile. 640 920 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1548 947 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 296 920 IPR051564 GO:0016020(PANTHER)
Cec11g1548 947 SUPERFAMILY RNI-like 64 340 - -
Cec11g1548 947 SUPERFAMILY Protein kinase-like (PK-like) 627 919 IPR011009 -
Cec11g1548 947 FunFam leucine-rich repeat receptor-like protein kinase TDR 726 931 - -
Cec11g1548 947 FunFam Receptor protein-tyrosine kinase CEPR1 276 561 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0768 Cec-Chr2:8667928 Cec11g1548 Cec-Chr11:29777168 1.10E-84 dispersed
Cec08g1233 Cec-Chr8:24279053 Cec11g1548 Cec-Chr11:29777168 5.10E-180 dispersed
Cec11g1548 Cec-Chr11:29777168 Cec04g2314 Cec-Chr4:40710818 3.70E-61 dispersed
Cec11g1547 Cec-Chr11:29759261 Cec11g1548 Cec-Chr11:29777168 3.10E-95 tandem
Cec11g1548 Cec-Chr11:29777168 Cec04g1496 Cec-Chr4:34477962 6.10E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72422 PF00069 Pkinase 5.80E-48 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1548 - - - 0.0