Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1551 ATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGAAGCTTTGTCAAGTCTAATGGGAAAGGAAAGTGGCAAAAGTCATCAGGTTCTCGTTCGCAAAATCAATCCTTGAAATTGTCTCCTGGCTATGCTGTCTTTCGTGTGCTCTTTCCTGTTTCCAGAATTGGCAGCCTTGTAGTAGGTAAAGATGGGGACGCTTTATCTAAAATTCGGGACGAAACAGGTGTAGAAATCAGAGTAGAGGACGCTGTTCCTGGATGTGATGAGAGAATAGTAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACACTGAGCAGAAGAGTAAGGAAGACAACAAAAATTCTGAAGTCGAGGAGAATGATGATGATATTGCCAAGTCGAAAAAGAAGGAAGATAAAGATTCTCCTCCTGTGGAAAATGCTAAACAGAAGGAGGTTTCTCATTTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAAATCTTTGATGAAGAACCGGAGGCAGATGGGACAGATATTGAAGGTGATAAGACATTTGTCTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAAGGTGGCAGTGTAGTCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCGCTTGCAACGACTAATAATGAGCTAGTCCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATGGAAAATTCACCCAATGATAAAGATCCTGTTGCCTTAAGCAATGCTGCACAGTCATCACATTCTTCTGGACTGTCTCTCTCTAGGGCTCATGAATCTCCTCTGGGTAGTAGTTCTTTTAATACTCATGGAGGCCCTTACTCTGTGCCTCGTGATGTTGGCAATTCTCATTTCAGTGCACCTTCTCTTGCTCCTAAACAGTATGAAAGCAGCATTCCTGGTCGAAGCAAACCTTCTCATGAAATTTTGAGTTATCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGCAGTAGTTAAGACTCTTCAGCAAGACACGGGCTGTGACATCAAAGTTGTTGAAGGTGCCTTGGACTCAGAAGACCGAATTATACTTGTAGCTGGTCCTGCGCATCCAGACGACAGAATATCACCAGTGCAAGACGCTGTTTTTCGTGTTCAGGCCAGGATTGTCAAAGCTGTACCAGAGGGCAAGGAGCAGAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGGAAGGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGAGCAGATTCCAAAGTGTGCTGGGGAGGATGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAACAGTTCAAGATGCCATGTTGCAGATTACTACTCGGCTGAGGCATCATTTTTTTCGTGATGCATTTCCATCAGTTAATAGTCATCCGAATCCTGCATTCATAGATAGACTTCCTTCATTTCCTTCATATTTTGGAAGGAGAGAATTATCACCTCCAGGAATTTATTCAAGTTTAGGCCCCTCATTTCACAAGTTTGATGCTCTTAGTGGCATTCCTTCACTTAGTGATTTGCGGGATGATCGACTTCCTTTTCTTCATAGGTCAGGTGCTCCTCTGTTATCTGATAGAAAGCCATGGAACTCTCAGGGATTAGTTGAAGGTGGTGTTGGCTTGTCAGACTTTGCAGGAGCCCATCATAGAAGACTTGCTGGATTTGGAGGAGGAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGTTGTTCCTCGAAACCTTGTCCCTGTCATTTGTGGAGAAAATGGTGAATGTTTGAAACAGATTCGACAGATTTCTGATGCAAAAATTACAATTACCGAACCAAAGCAAGGAGAAGTTGAAACTATGATTATAATTTCTGGAACGCCCGAGCAGACCCATGCTGCCCAGAGTCTTATTCAAGCTTTTGTATACGACGACTACTTTCTTATCTCTGGGCTGATTGTTTTGGAGAAAGGATGTTGA 2103 42.51 MSAPLTPSKRSRDRSFVKSNGKGKWQKSSGSRSQNQSLKLSPGYAVFRVLFPVSRIGSLVVGKDGDALSKIRDETGVEIRVEDAVPGCDERIVVIGGSNQETEVNTEQKSKEDNKNSEVEENDDDIAKSKKKEDKDSPPVENAKQKEVSHLRKALFLVSEKIFDEEPEADGTDIEGDKTFVLRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPLATTNNELVQISGGIDVVKKALELVFQQLMENSPNDKDPVALSNAAQSSHSSGLSLSRAHESPLGSSSFNTHGGPYSVPRDVGNSHFSAPSLAPKQYESSIPGRSKPSHEILSYRLLCPSERVGNVIGKGGAVVKTLQQDTGCDIKVVEGALDSEDRIILVAGPAHPDDRISPVQDAVFRVQARIVKAVPEGKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPETVQDAMLQITTRLRHHFFRDAFPSVNSHPNPAFIDRLPSFPSYFGRRELSPPGIYSSLGPSFHKFDALSGIPSLSDLRDDRLPFLHRSGAPLLSDRKPWNSQGLVEGGVGLSDFAGAHHRRLAGFGGGNNPAIITSTTVEVVVPRNLVPVICGENGECLKQIRQISDAKITITEPKQGEVETMIIISGTPEQTHAAQSLIQAFVYDDYFLISGLIVLEKGC 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29814740 29819199 - CePI673135_11g015510.1 Cec11g1551 216763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1551 700 CDD KH-I_PEPPER_rpt2_like 421 493 - -
Cec11g1551 700 MobiDBLite consensus disorder prediction 1 38 - -
Cec11g1551 700 MobiDBLite consensus disorder prediction 259 297 - -
Cec11g1551 700 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 608 683 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Cec11g1551 700 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 42 100 IPR036612 GO:0003723(InterPro)
Cec11g1551 700 MobiDBLite consensus disorder prediction 95 147 - -
Cec11g1551 700 ProSiteProfiles Type-1 KH domain profile. 615 679 - -
Cec11g1551 700 ProSiteProfiles Type-1 KH domain profile. 334 401 - -
Cec11g1551 700 ProSiteProfiles Type-1 KH domain profile. 60 111 - -
Cec11g1551 700 ProSiteProfiles Type-1 KH domain profile. 419 488 - -
Cec11g1551 700 MobiDBLite consensus disorder prediction 21 38 - -
Cec11g1551 700 Pfam KH domain 422 488 IPR004088 GO:0003723(InterPro)
Cec11g1551 700 Pfam KH domain 48 101 IPR004088 GO:0003723(InterPro)
Cec11g1551 700 Pfam KH domain 617 680 IPR004088 GO:0003723(InterPro)
Cec11g1551 700 Pfam KH domain 182 248 IPR004088 GO:0003723(InterPro)
Cec11g1551 700 Pfam KH domain 337 388 IPR004088 GO:0003723(InterPro)
Cec11g1551 700 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 173 254 IPR036612 GO:0003723(InterPro)
Cec11g1551 700 CDD KH-I_PEPPER_rpt2_like 181 252 - -
Cec11g1551 700 Gene3D K Homology domain, type 1 45 108 IPR036612 GO:0003723(InterPro)
Cec11g1551 700 Gene3D K Homology domain, type 1 613 688 IPR036612 GO:0003723(InterPro)
Cec11g1551 700 MobiDBLite consensus disorder prediction 259 328 - -
Cec11g1551 700 Gene3D K Homology domain, type 1 334 413 IPR036612 GO:0003723(InterPro)
Cec11g1551 700 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 415 499 IPR036612 GO:0003723(InterPro)
Cec11g1551 700 CDD KH-I_PEPPER_rpt1_like 337 402 - -
Cec11g1551 700 Gene3D K Homology domain, type 1 416 496 IPR036612 GO:0003723(InterPro)
Cec11g1551 700 Gene3D K Homology domain, type 1 177 256 IPR036612 GO:0003723(InterPro)
Cec11g1551 700 SMART kh_6 43 114 IPR004087 GO:0003676(InterPro)
Cec11g1551 700 SMART kh_6 178 253 IPR004087 GO:0003676(InterPro)
Cec11g1551 700 SMART kh_6 333 413 IPR004087 GO:0003676(InterPro)
Cec11g1551 700 SMART kh_6 614 684 IPR004087 GO:0003676(InterPro)
Cec11g1551 700 SMART kh_6 418 493 IPR004087 GO:0003676(InterPro)
Cec11g1551 700 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 336 411 IPR036612 GO:0003723(InterPro)
Cec11g1551 700 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 612 685 IPR036612 GO:0003723(InterPro)
Cec11g1551 700 ProSiteProfiles Type-1 KH domain profile. 179 248 - -
Cec11g1551 700 MobiDBLite consensus disorder prediction 105 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1551 K21444 - - csv:101221201 1201.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1742 Cec-Chr9:32717046 Cec11g1551 Cec-Chr11:29814740 1.50E-80 dispersed
Cec11g1216 Cec-Chr11:25424596 Cec11g1551 Cec-Chr11:29814740 5.60E-26 dispersed
Cec11g1551 Cec-Chr11:29814740 Cec09g1923 Cec-Chr9:36107029 9.40E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35