Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1559 ATGGCGATCGCTGCAGAGAACCAGCCCCAGGAGAAGATTACCACTACGGAGGCCTCTGCTGTCGAAAAGAGGAGATGGACGCTTAACGACTTTGACATTGGGAAGCCTCTCGGAAGAGGGAAGTTTGGTCATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCTCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCACAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCTAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAAAGGATTTATTTGGTATTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGCGCTGCTACTTACGTCGCGTCATTGGCTCGGGCACTCATATACTGTCATGGAAAACATGTAATACACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCTGACTTTGGATGGTCAGTGCACACGTTCAACCGTAGGCGGACCATGTGTGGAACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGCCTTGGTGTACTGTGCTATGAGTTTCTCTATGGGGTACCTCCATTTGAGGCTAAGGAACACTCTGACACATACAGGAGAATTGTGCAAGTAGATTTGAAGTTTCCTCCAAGACCGATCATTTCTTCAACTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTGCTCTCAACGTGACTGTGTTCTTGAAACAGCTTTCACCTACTATGGATTTTACCTTTTATTTTGTGGATCTAACGACTTATGTGAGCTTAATCGGTTCAAGGAGAAGAGGAAGATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAACAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCTAACTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTGATAAGAGGAAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAAACTTCGTTTAATGTTGTTGAGAACTTTGGTTTCTCACAAGACTCATTGA 1377 45.46 MAIAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQMLVKDCSQRDCVLETAFTYYGFYLLFCGSNDLCELNRFKEKRKMSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELTAIMNDFEQPGSLALTGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAAKLRLMLLRTLVSHKTH 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29869735 29875591 + CePI673135_11g015590.1 Cec11g1559 216771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1559 458 FunFam Aurora kinase A 23 114 - -
Cec11g1559 458 SUPERFAMILY Protein kinase-like (PK-like) 19 272 IPR011009 -
Cec11g1559 458 SUPERFAMILY Profilin (actin-binding protein) 306 434 IPR036140 -
Cec11g1559 458 FunFam Serine/threonine-protein kinase ark1 23 280 - -
Cec11g1559 458 ProSiteProfiles Protein kinase domain profile. 31 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1559 458 Gene3D Dynein light chain 2a, cytoplasmic 303 435 - -
Cec11g1559 458 Gene3D Transferase(Phosphotransferase) domain 1 115 280 - -
Cec11g1559 458 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524(InterPro)
Cec11g1559 458 SMART serkin_6 31 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1559 458 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Cec11g1559 458 CDD PROF 306 434 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Plant profilin signature 305 318 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Plant profilin signature 375 384 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Plant profilin signature 388 403 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Plant profilin signature 408 421 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Plant profilin signature 331 344 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Plant profilin signature 421 434 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Plant profilin signature 356 370 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 270 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Cec11g1559 458 FunFam Profilin 305 435 - -
Cec11g1559 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec11g1559 458 SMART prof_2 305 435 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Profilin signature 404 417 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Profilin signature 344 364 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Profilin signature 307 316 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Profilin signature 417 434 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Profilin signature 368 382 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 PRINTS Profilin signature 325 334 IPR005455 GO:0003779(InterPro)
Cec11g1559 458 CDD STKc_Aurora 30 270 - -
Cec11g1559 458 Pfam Profilin 305 435 IPR048278 GO:0003779(InterPro)
Cec11g1559 458 Pfam Protein kinase domain 33 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1559 K08850 - - csv:101219866 545.428
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0243 Cec-Chr5:1986812 Cec11g1559 Cec-Chr11:29869735 1.20E-100 dispersed
Cec11g0212 Cec-Chr11:2303911 Cec11g1559 Cec-Chr11:29869735 2.10E-55 dispersed
Cec11g0213 Cec-Chr11:2307322 Cec11g1559 Cec-Chr11:29869735 6.70E-49 dispersed
Cec11g0977 Cec-Chr11:16173631 Cec11g1559 Cec-Chr11:29869735 7.40E-16 dispersed
Cec11g1492 Cec-Chr11:29135004 Cec11g1559 Cec-Chr11:29869735 1.40E-32 dispersed
Cec11g1559 Cec-Chr11:29869735 Cec05g2384 Cec-Chr5:35169465 6.70E-24 dispersed
Cec11g1559 Cec-Chr11:29869735 Cec09g0023 Cec-Chr9:237917 2.10E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.7e-214 740.7
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.7e-212 734.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT2G37620 97.2 4.1e-205 710.7
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.2e-200 693.7
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 4.9e-214 740.3
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 8.6e-211 729.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT5G59370 96.9 3.9e-203 704.1
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.2e-200 693.7
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.1e-197 683.3
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.2e-214 741.5
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G46520 97.2 1.7e-203 705.3
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.2e-197 684.5
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.1e-213 737.3
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G12110 96.9 2.1e-204 708.4
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.0e-199 691.8
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.2e-209 723.4
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.9e-208 719.5
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-199 691.0
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.6e-196 680.6
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.1e-209 724.9
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT1G49240 93.1 3.4e-199 691.0
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.6e-196 682.2
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 7.8e-212 733.0
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT5G09810 96.7 1.0e-203 706.1
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.0e-203 704.5
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT2G19760 72.5 4.4e-53 204.1
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT2G19760 76.9 7.8e-50 193.4
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT4G29350 70.2 9.2e-51 196.4
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT4G29350 76.9 1.1e-48 189.5
Cec11g0213 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.6e-38 153.7
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT4G29340 72.4 1.5e-53 205.7
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT4G29340 65.8 2.9e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002459 2 3 1 2 1 1 3 2 2 1 1 1 3 2 2 2 2 4 3 2 2 2 2 2 1 1 2 3 1 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72423 PF00069 Pkinase 5.50E-69 CL0016 Cec PK