Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1592 ATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCTTCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAGGCCTCTACATTCCTCAGTAGCTGCAAAGCTCCAATCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACCGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGCGGGAACAGCAGCTGTGAAGGTGGAGAACTCCTCGTCACGGGCTGTCACAGAGAGTGACGGGTCTGCAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA 1092 47.89 MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYRPLHSSVAAKLQSICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAAGTAAVKVENSSSRAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30255730 30256821 + CePI673135_11g015920.1 Cec11g1592 216804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1592 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 361 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cec11g1592 363 Gene3D AP2/ERF domain 179 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g1592 363 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g1592 363 PRINTS Ethylene responsive element binding protein signature 202 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g1592 363 SMART rav1_2 179 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g1592 363 MobiDBLite consensus disorder prediction 272 291 - -
Cec11g1592 363 CDD AP2 178 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g1592 363 MobiDBLite consensus disorder prediction 296 326 - -
Cec11g1592 363 ProSiteProfiles AP2/ERF domain profile. 179 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g1592 363 FunFam Ethylene-responsive transcription factor 2 178 237 - -
Cec11g1592 363 Pfam AP2 domain 179 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g1592 363 SUPERFAMILY DNA-binding domain 179 236 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0122 Cec-Chr2:1307445 Cec11g1592 Cec-Chr11:30255730 1.10E-27 dispersed
Cec02g1828 Cec-Chr2:36120618 Cec11g1592 Cec-Chr11:30255730 1.90E-27 dispersed
Cec04g1588 Cec-Chr4:35308096 Cec11g1592 Cec-Chr11:30255730 1.40E-61 dispersed
Cec06g0821 Cec-Chr6:10069849 Cec11g1592 Cec-Chr11:30255730 4.90E-29 dispersed
Cec08g1512 Cec-Chr8:26852543 Cec11g1592 Cec-Chr11:30255730 3.30E-18 dispersed
Cec11g0313 Cec-Chr11:3367401 Cec11g1592 Cec-Chr11:30255730 5.00E-18 dispersed
Cec11g0630 Cec-Chr11:6940045 Cec11g1592 Cec-Chr11:30255730 9.60E-17 dispersed
Cec11g1592 Cec-Chr11:30255730 Cec02g1990 Cec-Chr2:37748201 1.70E-17 dispersed
Cec11g1592 Cec-Chr11:30255730 Cec08g1123 Cec-Chr8:23152688 1.50E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30562 PF00847 AP2 2.80E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1592 K09286 - csv:101214560 611.298