Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1625 ATGGATAAAAATGACGGAGTTCTCGTGGCTACACGTTCACATCACTTATGCCGTTATTTCCCGAATCACCGGTTTTGCTATAACTTCATCAAAGAAGAAGAAAACCTAGAAAAGATTACCGGAGCGTCGGGACCAGGATCGGATTCGGAAGCTATTTTGGTTCTTAATCCAATGGCGTCTACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCTGCTGCAGCTCTTGTTTTCTCATGCATGGGTGCTGCTTATGGGACTGCTAAGAGTGGAGTTGGAGTGGCTTCCATGGGAGTCATGCGACCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACATCTGTCTTCTGGGCTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAGGCTCTTGCCCTCTATGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCAGGCCAATCTCGTGCAGATTAA 669 46.49 MDKNDGVLVATRSHHLCRYFPNHRFCYNFIKEEENLEKITGASGPGSDSEAILVLNPMASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30517534 30521399 - CePI673135_11g016250.1 Cec11g1625 216837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1625 222 CDD ATP-synt_Vo_c_ATP6C_rpt2 146 213 - -
Cec11g1625 222 Gene3D - 68 219 IPR035921 -
Cec11g1625 222 PRINTS Vacuolar ATP synthase 16kDa subunit signature 113 137 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cec11g1625 222 PRINTS Vacuolar ATP synthase 16kDa subunit signature 164 190 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cec11g1625 222 PRINTS Vacuolar ATP synthase 16kDa subunit signature 87 111 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cec11g1625 222 PRINTS Vacuolar ATP synthase 16kDa subunit signature 191 214 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cec11g1625 222 CDD ATP-synt_Vo_c_ATP6C_rpt1 70 137 - -
Cec11g1625 222 FunFam V-type proton ATPase proteolipid subunit 68 219 - -
Cec11g1625 222 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 60 216 - GO:0016021(PANTHER)
Cec11g1625 222 SUPERFAMILY F1F0 ATP synthase subunit C 71 134 IPR035921 -
Cec11g1625 222 NCBIfam V-type ATPase subunit C 70 178 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cec11g1625 222 SUPERFAMILY F1F0 ATP synthase subunit C 144 213 IPR035921 -
Cec11g1625 222 Pfam ATP synthase subunit C 154 212 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cec11g1625 222 Pfam ATP synthase subunit C 74 133 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1497 Cec-Chr8:26704086 Cec11g1625 Cec-Chr11:30517534 3.00E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1625 K02155 - ath:AT1G19910 287.345