Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec11g1625 | ATGGATAAAAATGACGGAGTTCTCGTGGCTACACGTTCACATCACTTATGCCGTTATTTCCCGAATCACCGGTTTTGCTATAACTTCATCAAAGAAGAAGAAAACCTAGAAAAGATTACCGGAGCGTCGGGACCAGGATCGGATTCGGAAGCTATTTTGGTTCTTAATCCAATGGCGTCTACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCTGCTGCAGCTCTTGTTTTCTCATGCATGGGTGCTGCTTATGGGACTGCTAAGAGTGGAGTTGGAGTGGCTTCCATGGGAGTCATGCGACCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACATCTGTCTTCTGGGCTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAGGCTCTTGCCCTCTATGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCAGGCCAATCTCGTGCAGATTAA | 669 | 46.49 | MDKNDGVLVATRSHHLCRYFPNHRFCYNFIKEEENLEKITGASGPGSDSEAILVLNPMASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 222 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30517534 | 30521399 | - | CePI673135_11g016250.1 | Cec11g1625 | 216837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec11g1625 | 222 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 146 | 213 | - | - | |
Cec11g1625 | 222 | Gene3D | - | 68 | 219 | IPR035921 | - | |
Cec11g1625 | 222 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 113 | 137 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cec11g1625 | 222 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 164 | 190 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cec11g1625 | 222 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 87 | 111 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cec11g1625 | 222 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 191 | 214 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cec11g1625 | 222 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 70 | 137 | - | - | |
Cec11g1625 | 222 | FunFam | V-type proton ATPase proteolipid subunit | 68 | 219 | - | - | |
Cec11g1625 | 222 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 60 | 216 | - | GO:0016021(PANTHER) | |
Cec11g1625 | 222 | SUPERFAMILY | F1F0 ATP synthase subunit C | 71 | 134 | IPR035921 | - | |
Cec11g1625 | 222 | NCBIfam | V-type ATPase subunit C | 70 | 178 | IPR011555 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cec11g1625 | 222 | SUPERFAMILY | F1F0 ATP synthase subunit C | 144 | 213 | IPR035921 | - | |
Cec11g1625 | 222 | Pfam | ATP synthase subunit C | 154 | 212 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Cec11g1625 | 222 | Pfam | ATP synthase subunit C | 74 | 133 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec08g1497 | Cec-Chr8:26704086 | Cec11g1625 | Cec-Chr11:30517534 | 3.00E-75 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec11g1625 | K02155 | - | ath:AT1G19910 | 287.345 |