Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1629 ATGAAGGTCGAGCGGCAACGGATCGTCGTCGAAAATTCCGGATTTCCTTTCGTGTTCGATCACCAACCGGCGGAACTAGTGCTTGTTTTTTTCTTCTCGGAGTCTATTTCATCGGCGGCGAGTGATTTGGTTGCGCTCTGCGCATTTCGATTCGTTGATCAACATCGTAAGTATCTCATCCAGATGAAAACTGCTGATGCATCTTTGTTCAGCATGTTCTTCAAACATAAGGATAAAGGTTCTACATCCAATGATGAGTCAGAGGACCTTGGTGATGTTCTTGACAGTGAGGTGAACTCTTACCTAAACAATAGGAAGGAGACACATTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGACCAAGCAGCTAAGAAACTAGGTCGTGATATTGTTGGAGCTGCAGCTGTGGTTAAAAAATCAAAGAAGAGGCAAAGGAAAAAAGAGGCTCCTATAAACAACCCTGCTCAAGCCGATACAGAAGCTTCACGTGAAATGCTTACTAAGAAGAGGCTCAGTTCAAAATTCAACTTCGACGTGTTGGACAAGCTCTTCTCCGATACACCTGCACCTGATTCAAGCGAAAAGCAGGGAGTCTCAAGTTGTAAAGAAAATAGTTCATTGAAACAAAGCCATCAAAGCCATTGTAGTTACCAGCTTGAAGACGACCTTGAAGACAATCATACGGACACAATGTTTGAAGAAAACATCGACATTGAAGGTGAAGATCCCACAGAAACTTATGGTAATGAGTATTATGATTTCGAAAACGAGGAAGAGTATGGCTATGGATACGATTTAGGAAACTGCAAAGTCAATGCTTCTCTTTTTCTTTCCTCTCTTGGAAGGAGAGCATTGGGCAAAAGTTCATTAAAGAAGAAAGAAAACCATAAGTTGATCATTCTCCAAGGGAAGTATCCATTGCACACTCATGGCTTCAGATTATGCGTTGAAGGTCCCTGCCGAACTAGAATCAGCTTTGCGGTTAAAGACTGTTCAGTACTTCATTACAAAAAGGCCGTGGCTTGGTGTTGTATTTCAGATCTCTATGGGGTTAATGTTAGACCCGTTGCGCCATTTGGAAGTTCGAGTCGGCAGCCATTTGTTGATCCAGCATTAATACATCGCAGCTTGCCAGATGAGTTATTGTTTGAGGTCTTTGCCAGAATGGCTCCTTATGACCTGGGACGGGCATCGTGTGTCTGTCGAAAATGGAGATATACTATTCGGAATCCTGTATTCTGGCGTAGTGCTTGTTTGAAGGCTTGGCAGCTCTCTGGTGTGGTTGAAAACTACAAGTTTTTACAGTCTATGTATGATGGATCATGGAGAAAAATGTGGCTTTTACGACCAAGGATCCGTACTGATGGCCTTTATGTTAGCAGGAATACTTATATACGTGCTGGGATTGCAGAGTGGAAGATTACCAATCCAGTTCACCTGGTCTGCTATTTCCGTTACATCAGATTTTTTCCTTCTGGGCGGTTTCTCTACAAGAATTCTTCACAGAAGATTAAGGATGTGGCTAAGTGCATGAATTTTCGTGCTTCGAAAGCTGACTGTATTTTTGGTGGACACTATACCTTGTCAGATGATAAGGTTGAAGCAGCTGTTTTGTACCCAGGTGCTCGTCCTACTGTGCTCAGAATCCGGATGAGGCTAAGAGGAACGTCAACAGGGGCTAATAACCGAATGGATCTATTAACCCTTGTTACCAGTGGTATGAATAACAATGAGGTTGGTGATCCTGAAGAAGATATCCTTGGCATAGTGGAAAGGTGGCGAGACGATGAAACACACAACCCGGACGTGCCTGCAGTTTCTCATAAGCGGGGTCTGACACCTTTTATATTTGTTCCTTTTGATCAGGTGGAAACATCAGAACTAAACTTGCCTGTAGATAAGATGGACTATTTTGTACCCGTATTGTATGATTGTATTGCAGAAACTGCAAAACTGATGTTTATTTATAAATTGATGCAACCTGAGAAATTGAAGAATGTGGAGGTTTAG 2025 42.17 MKVERQRIVVENSGFPFVFDHQPAELVLVFFFSESISSAASDLVALCAFRFVDQHRKYLIQMKTADASLFSMFFKHKDKGSTSNDESEDLGDVLDSEVNSYLNNRKETHYKKIIWEQINKDYLQDQAAKKLGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTEASREMLTKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGVSSCKENSSLKQSHQSHCSYQLEDDLEDNHTDTMFEENIDIEGEDPTETYGNEYYDFENEEEYGYGYDLGNCKVNASLFLSSLGRRALGKSSLKKKENHKLIILQGKYPLHTHGFRLCVEGPCRTRISFAVKDCSVLHYKKAVAWCCISDLYGVNVRPVAPFGSSSRQPFVDPALIHRSLPDELLFEVFARMAPYDLGRASCVCRKWRYTIRNPVFWRSACLKAWQLSGVVENYKFLQSMYDGSWRKMWLLRPRIRTDGLYVSRNTYIRAGIAEWKITNPVHLVCYFRYIRFFPSGRFLYKNSSQKIKDVAKCMNFRASKADCIFGGHYTLSDDKVEAAVLYPGARPTVLRIRMRLRGTSTGANNRMDLLTLVTSGMNNNEVGDPEEDILGIVERWRDDETHNPDVPAVSHKRGLTPFIFVPFDQVETSELNLPVDKMDYFVPVLYDCIAETAKLMFIYKLMQPEKLKNVEV 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30574060 30583961 - CePI673135_11g016290.1 Cec11g1629 216841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1629 674 Pfam F-box only protein C-terminal region 436 645 IPR045464 -
Cec11g1629 674 Pfam F-box-like 381 424 IPR001810 GO:0005515(InterPro)
Cec11g1629 674 MobiDBLite consensus disorder prediction 194 219 - -
Cec11g1629 674 CDD F-box_AtGID2-like 380 423 - -
Cec11g1629 674 MobiDBLite consensus disorder prediction 142 169 - -
Cec11g1629 674 SUPERFAMILY F-box domain 381 456 IPR036047 GO:0005515(InterPro)
Cec11g1629 674 Gene3D Single helix bin 70 133 - -
Cec11g1629 674 Pfam Brf1-like TBP-binding domain 92 190 IPR011665 -
Cec11g1629 674 SMART fbox_2 382 422 IPR001810 GO:0005515(InterPro)
Cec11g1629 674 ProSiteProfiles F-box domain profile. 376 422 IPR001810 GO:0005515(InterPro)
Cec11g1629 674 PANTHER F-BOX ONLY PROTEIN 48-RELATED 199 644 IPR045118 GO:0005737(PANTHER)|GO:0019005(PANTHER)|GO:0019005(InterPro)|GO:0031146(PANTHER)|GO:0031146(InterPro)
Cec11g1629 674 MobiDBLite consensus disorder prediction 193 221 - -
Cec11g1629 674 FunFam F-box protein 7 368 460 - -
Cec11g1629 674 Gene3D - 372 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1629 K10295 - - csv:101219089 606.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g255 . . . . . . . . . . . Cma09g00791 . . . Cpe06g00624 . . . . . . . . . . . . . . . Cone4ag1413 Cone7ag1525 . . Lsi04g02394 Csa04g01794 . . . . . Bda01g01441 Bpe02g01645 . . . . . Cmo09g00783 . . . Car09g00704 . . Bhi09g02687 . . . . . . Cla11g01539 Cam11g1600 Cec11g1629 Cco11g1630 Clacu11g1757 Cmu11g1573 Cre11g1991 . . Chy07g00633 Cme07g00847