Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1645 ATGAATGCGGGGGATTTGAACCTCAAATCTCTTGATTGGAGGGTGGATCAAAATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAAAAATAGTACGGTCCCTTTTTCCTTGCTTTCGTTTCACTTGTTTCTCAGAATGTGTTGCATTATCTCAACCATCGTTCATTTCTCCGATTGACAGTCGACCGAAGCAAGTGAAAGATGTGGCGTATCAGGATGAAGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAGTTGTCCCCATATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCAATTTCTCACCAACTATTCGGTCCCGAACTTTACAAGTCCAGAGTTTTAGAGTTGAATGCAAGTGATGACCGCGGGATCAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACGGAAGATGCTCAGAATGCTCTGAGGCGTACCATGGAAACACACTCTAAAGTGACACGCTTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAAGTTATGAGCAAGCGTATATTGCATATTAGTAATGAAGAAGGTCTTAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCAGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATTTGATTAGTGTGTCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTCACTGCTTGTAAAAGTGGTAACTTTGATATTGCAAACAAGGAAGTCAACAATGTGCTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAAGATATGCAAGAAGTTGGCCGAAGCAGACAAGTGTCTCGTCGATGGCGCGGATGAATATTTGCAACTGCTCGATGTGGTTAGTCAAATGATGCAAGCTTTAAGCAGTATGCAATCATACAAAAGAAGGGGTTTAGAACTTATACATTCTAGATTTGGAACCAAGGAGAGGTCTCATCGTTGGAACTTCCAAATTGAACAAATTCTCACTTGGCAACATGATCAATATGGCAATATGGCAATATGGCAATATGGCAATGCATGA 1296 43.36 MNAGDLNLKSLDWRVDQNGAIVAELSTMGGKIVRSLFPCFRFTCFSECVALSQPSFISPIDSRPKQVKDVAYQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDALFTACKSGNFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQMMQALSSMQSYKRRGLELIHSRFGTKERSHRWNFQIEQILTWQHDQYGNMAIWQYGNA 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30774026 30783474 + CePI673135_11g016450.1 Cec11g1645 216857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1645 431 Gene3D - 223 286 - -
Cec11g1645 431 FunFam Replication factor C subunit 5 56 221 - -
Cec11g1645 431 Gene3D - 60 220 IPR027417 -
Cec11g1645 431 Pfam RCF1/5-like, AAA+ ATPase lid domain 232 269 - -
Cec11g1645 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 268 IPR027417 -
Cec11g1645 431 FunFam Replication factor C subunit 4 223 286 - -
Cec11g1645 431 Pfam Replication factor C C-terminal domain 288 372 IPR013748 -
Cec11g1645 431 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 63 379 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cec11g1645 431 CDD AAA 73 213 - -
Cec11g1645 431 FunFam Replication factor C subunit 4 287 376 - -
Cec11g1645 431 SUPERFAMILY post-AAA+ oligomerization domain-like 287 376 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cec11g1645 431 CDD HLD_clamp_RFC 221 280 IPR047854 -
Cec11g1645 431 SMART AAA_5 88 221 IPR003593 GO:0016887(InterPro)
Cec11g1645 431 Gene3D - 287 377 - -
Cec11g1645 431 Pfam ATPase family associated with various cellular activities (AAA) 92 220 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0359 Cec-Chr10:4254235 Cec11g1645 Cec-Chr11:30774026 1.20E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1645 K10755 - csv:101221224 590.497