Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1647 ATGCTGAAGCCGATACCCTTCACCGGAGCTAATGTGTTCGTCTCCCGCAATCTTGTCGCTCCGGAGATGTTCGACGCTCTTCACGACGCTCTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCGAAACGGTCCTAACGATTATCATGTTATCTCCTCGGCCGATCACGAAAAATTCGAGGATCTTCGCGCGAAGGGATGCAAGTTGCTAGGTCCTCAGTGTGTGATGTCATGCGCAAAAGAGCACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCAATGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCATACGAAAGCCTCTCTAGATGTCAGCTTTGTTATTGCGAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGACATTTGCTTGGTTACAACAATGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGAGTCCCTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCTGCAGGTGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATACTCTGCCGATCTTACGAGAAAGTTCGATCCTTTTCATAGTGACAAGTACAAGGTTGCACGGACATGGGGCCGTATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGCTAGAAAAGCATGTCTTAATGAGGAGTCATACCCTGTTGGTAGCATTTCCGGAACTTCAAATAAAATGACGAGGGCCTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTACTGGGAACTTGCAAACTGTACCGTCCTCATTTATTGCTGATTCAAATTTCGCAGCAGTTTCTGGTCCTGGGTTTTCAGATATGGATTTTGAAGCTACTCTTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTTCCAGTTGGCATGGGAAAGAATGAAGAAAACACCAATAATTGTATTGCAAATGACTTTCAGTCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCGTCTGAGATGCGAAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCAGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAAATCCATCGGAAATGGAGAAAAAGGAGGTTAGAGATATTGCAGCTTCAGGAGTCATTCATGTGGTTAGAACCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTAGTAGACACATGGCATATGATGAACTGATTCCTAAAGCATCCAGTAAAACGAGCACCATTGTCATGGATCGGAATAAAGTTCCAAATGTTCATCCAATCATGCCATCAAATGTGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAATGACAGAGGAAACAATTCAAGAAAAAAGTGAAACAATGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGCCAACAATGTGTAGCAAATGGTACAAACAAGAGTCAAGAAAAGATGCGGCGTGATTTCGTGGTTCTAAATGGGAAGTCATCATGTGTGTTTAGGGGAAAAATATTTTGTTTTTCTAGTTCCTTCCCAGAAGATCGGAGAGGTGAAATTGTTGAATGGATAAATCAAGGGGGAGGTGAGGTTGTTGAAGATCGTATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGATACCAAGGGGTACAGATGTGCATACTACTTACGTATCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCGAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGTAAGTTTTCCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGACTTTTCCACCTGACTGTTCGGTCGTTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGACATTAGCAATCCTACTACTGGAGATGGGAGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCAGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA 2445 41.92 MLKPIPFTGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCKLLGPQCVMSCAKEHRPLPQQGFTCCLAMDGVKILASGFQEDEKVEIGKLVNAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVTFAWLQQCWIEHRVVPQEGYRVPPFSGLNISVSRIPAGERKEIEKLILQNGGRYSADLTRKFDPFHSDKYKVARTWGRINIVTRKWFDQSIARKACLNEESYPVGSISGTSNKMTRACLTAHNSQEKVTGNLQTVPSSFIADSNFAAVSGPGFSDMDFEATLSQSTSMFSDASHFINEVDVEVPVGMGKNEENTNNCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTNWLEDCDRQKKEIPILSRHMAYDELIPKASSKTSTIVMDRNKVPNVHPIMPSNVLEGNIHVRIGKTSMTEETIQEKSETMSGDRTMKLSQKSQQCVANGTNKSQEKMRRDFVVLNGKSSCVFRGKIFCFSSSFPEDRRGEIVEWINQGGGEVVEDRMKQKVHFTVECHGEIPRGTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSVGIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMT 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30791557 30808480 - CePI673135_11g016470.1 Cec11g1647 216859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1647 814 ProSiteProfiles BRCT domain profile. 368 460 IPR001357 -
Cec11g1647 814 ProSiteProfiles BRCT domain profile. 182 266 IPR001357 -
Cec11g1647 814 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 729 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Cec11g1647 814 SUPERFAMILY BRCT domain 185 267 IPR036420 -
Cec11g1647 814 FunFam Transcription coactivator 97 185 - -
Cec11g1647 814 Gene3D BRCT domain 186 268 IPR036420 -
Cec11g1647 814 Pfam BRCA1 C Terminus (BRCT) domain 561 605 IPR001357 -
Cec11g1647 814 Pfam BRCA1 C Terminus (BRCT) domain 373 446 IPR001357 -
Cec11g1647 814 CDD BRCT 660 726 - -
Cec11g1647 814 SMART BRCT_7 370 450 IPR001357 -
Cec11g1647 814 SMART BRCT_7 97 174 IPR001357 -
Cec11g1647 814 SMART BRCT_7 559 634 IPR001357 -
Cec11g1647 814 SMART BRCT_7 184 256 IPR001357 -
Cec11g1647 814 SMART BRCT_7 4 86 IPR001357 -
Cec11g1647 814 SMART BRCT_7 654 730 IPR001357 -
Cec11g1647 814 Pfam twin BRCT domain 191 248 IPR001357 -
Cec11g1647 814 Pfam twin BRCT domain 661 722 IPR001357 -
Cec11g1647 814 Pfam twin BRCT domain 103 166 IPR001357 -
Cec11g1647 814 CDD BRCT 103 170 - -
Cec11g1647 814 MobiDBLite consensus disorder prediction 523 541 - -
Cec11g1647 814 FunFam Transcription coactivator 36 94 - -
Cec11g1647 814 FunFam Transcription coactivator 555 650 - -
Cec11g1647 814 Gene3D BRCT domain 349 457 IPR036420 -
Cec11g1647 814 SUPERFAMILY BRCT domain 622 730 IPR036420 -
Cec11g1647 814 Gene3D BRCT domain 97 185 IPR036420 -
Cec11g1647 814 MobiDBLite consensus disorder prediction 742 780 - -
Cec11g1647 814 SUPERFAMILY BRCT domain 57 185 IPR036420 -
Cec11g1647 814 Gene3D BRCT domain 23 94 IPR036420 -
Cec11g1647 814 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Cec11g1647 814 Gene3D BRCT domain 554 650 IPR036420 -
Cec11g1647 814 MobiDBLite consensus disorder prediction 518 541 - -
Cec11g1647 814 FunFam Transcription coactivator 350 460 - -
Cec11g1647 814 SUPERFAMILY BRCT domain 561 646 IPR036420 -
Cec11g1647 814 SUPERFAMILY BRCT domain 370 454 IPR036420 -
Cec11g1647 814 ProSiteProfiles BRCT domain profile. 557 644 IPR001357 -
Cec11g1647 814 Gene3D BRCT domain 652 734 IPR036420 -
Cec11g1647 814 ProSiteProfiles BRCT domain profile. 657 729 IPR001357 -
Cec11g1647 814 CDD BRCT_TopBP1_rpt2_like 185 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1647 K10728 - - csv:101212525 1299.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814