Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec11g1650 | ATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGTAGCCCTTCTACACCTTTGATTGACATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCTCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAGCGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA | 639 | 39.12 | MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30825720 | 30829942 | + | CePI673135_11g016500.1 | Cec11g1650 | 216862 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec11g1650 | 212 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 181 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cec11g1650 | 212 | SUPERFAMILY | SRF-like | 2 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec11g1650 | 212 | Gene3D | - | 13 | 100 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec11g1650 | 212 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec11g1650 | 212 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec11g1650 | 212 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec11g1650 | 212 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec11g1650 | 212 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec11g1650 | 212 | ProSiteProfiles | K-box domain profile. | 84 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec11g1650 | 212 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec11g1650 | 212 | Pfam | K-box region | 82 | 163 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec11g1650 | 212 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec11g1650 | 212 | Coils | Coil | 77 | 111 | - | - | |
Cec11g1650 | 212 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g2044 | Cec-Chr5:32349924 | Cec11g1650 | Cec-Chr11:30825720 | 9.20E-34 | dispersed | |
Cec05g2649 | Cec-Chr5:37170815 | Cec11g1650 | Cec-Chr11:30825720 | 1.50E-14 | dispersed | |
Cec08g1082 | Cec-Chr8:22663580 | Cec11g1650 | Cec-Chr11:30825720 | 2.70E-26 | dispersed | |
Cec10g0980 | Cec-Chr10:22215785 | Cec11g1650 | Cec-Chr11:30825720 | 3.70E-20 | dispersed | |
Cec11g1650 | Cec-Chr11:30825720 | Cec07g1716 | Cec-Chr7:32698954 | 3.00E-27 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30566 | PF01486 | K-box | 1.20E-18 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec11g1650 | K09264 | - | csv:101222239 | 408.297 |