Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1650 ATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGTAGCCCTTCTACACCTTTGATTGACATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCTCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAGCGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA 639 39.12 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30825720 30829942 + CePI673135_11g016500.1 Cec11g1650 216862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1650 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec11g1650 212 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec11g1650 212 Gene3D - 13 100 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec11g1650 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec11g1650 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec11g1650 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec11g1650 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec11g1650 212 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec11g1650 212 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec11g1650 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec11g1650 212 Pfam K-box region 82 163 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec11g1650 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec11g1650 212 Coils Coil 77 111 - -
Cec11g1650 212 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2044 Cec-Chr5:32349924 Cec11g1650 Cec-Chr11:30825720 9.20E-34 dispersed
Cec05g2649 Cec-Chr5:37170815 Cec11g1650 Cec-Chr11:30825720 1.50E-14 dispersed
Cec08g1082 Cec-Chr8:22663580 Cec11g1650 Cec-Chr11:30825720 2.70E-26 dispersed
Cec10g0980 Cec-Chr10:22215785 Cec11g1650 Cec-Chr11:30825720 3.70E-20 dispersed
Cec11g1650 Cec-Chr11:30825720 Cec07g1716 Cec-Chr7:32698954 3.00E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30566 PF01486 K-box 1.20E-18 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1650 K09264 - csv:101222239 408.297