Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1716 ATGACGTCAACTGTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGCGAATCCGATGAAGGAAAAGTTGTTCGAGAAGTCTGCGCAAATGGGGTCTGCATTAAAACAACAGAAGTAGAAGCAAAGCTTGATGAGGGAAATATCCAAGAGGCAGAATCTTCACTACGGGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGTAATGTTGAAGGTGCTCTACGTGTGTTTGATGGCATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGCGTTACTGAGAAGACGCCTCCAAAAAAAGGACGTGCTCGCTCTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTTGTTCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGATGGGCAAGTGGATAGTAGATTGCAAGATACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGCAATATCTGCCTATAGACGTGCCCTCCTAAGCCAATGGAACCTCAATAATGAAACCTGTGCTAGGATCCAGAAAGGATTTGCTGTATTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCAAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGGTTCTTGTGAAGAAATGTTACCTTGGTAACATAAAATGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCTTATGTAGTCAGACATCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTATCTCTTTGTTATTTTGCAGCAGGTCAGAATAAAGTTGCCTTAAATCTTCTGAGAAAGTCTCTACACAAACACGAGCAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTCGCGGCTGAAGGTGTTGGTTATGCCCAGCGGGCAATGAACAATTCTATAGAAAATGAAGAGCATTTAAAGGGTGTGGGTCTTCGTTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGGCTTCCTCTGACTTTGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGCAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAATATCGGAATTTGAATGCTGCTCTGCAATATGCAAAGAAGTTTATTGATGAAACTGGTGGTTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAAGTGGTTACTGATGCTGCAATCGATGAGACCACAAAATGGGAACAGGGACCACTTCTCAGACTCAAGGCAAAGCTGAAGGTCTCTCAATCATTACATATGGATGCTATTGAAACTTACCGTTATCTCCTTGCATTAGTTCAAGCGCAAAAGAAATCGTTTGGGCCTCTCCGAATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAATTTGAAGTGTGGAATGGTCTAGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAGAGAGCTGAAGGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATGTGTGAAGGACGTGAGAAAATACAAGAAGCTCTAGCTGCTTACATTAATGCTCTCCTACTCGAACCGTCTTATGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAAGCGGGCCCAGATGCATTGCCTATAGCGAGAAGCTTACTTTCAGACGCATTGAGATTAGATCCTACCAACCGTAAGGCTTGGTTTTACTTAGGGGTCATTCATAGGGATGAAGGACGAATGGCCGATGCCATAGACTGTTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTATTCTCTAG 2127 43.3 MTSTVDEDDREPAMESGESDEGKVVREVCANGVCIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCVTEKTPPKKGRARSESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVDSRLQDTVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNETCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMVLVKKCYLGNIKWDPSVMEHLIFALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLSLCYFAAGQNKVALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMNNSIENEEHLKGVGLRLLGLCLGKQAKMASSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAIDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEFSPEVLHTEGLMCEGREKIQEALAAYINALLLEPSYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSIL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31412841 31417392 - CePI673135_11g017160.1 Cec11g1716 216928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1716 708 Gene3D Tetratricopeptide repeat domain 558 643 IPR011990 GO:0005515(InterPro)
Cec11g1716 708 Gene3D Tetratricopeptide repeat domain 647 704 IPR011990 GO:0005515(InterPro)
Cec11g1716 708 SMART tpr_5 316 349 IPR019734 GO:0005515(InterPro)
Cec11g1716 708 SMART tpr_5 472 505 IPR019734 GO:0005515(InterPro)
Cec11g1716 708 SMART tpr_5 596 629 IPR019734 GO:0005515(InterPro)
Cec11g1716 708 SMART tpr_5 562 595 IPR019734 GO:0005515(InterPro)
Cec11g1716 708 SMART tpr_5 666 699 IPR019734 GO:0005515(InterPro)
Cec11g1716 708 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515(InterPro)
Cec11g1716 708 MobiDBLite consensus disorder prediction 1 22 - -
Cec11g1716 708 SUPERFAMILY TPR-like 195 465 IPR011990 GO:0005515(InterPro)
Cec11g1716 708 Gene3D Tetratricopeptide repeat domain 256 557 IPR011990 GO:0005515(InterPro)
Cec11g1716 708 Gene3D Tetratricopeptide repeat domain 38 215 IPR011990 GO:0005515(InterPro)
Cec11g1716 708 PANTHER PROTEIN NPG1 13 706 IPR043376 -
Cec11g1716 708 FunFam NPG1 553 702 - -
Cec11g1716 708 Pfam Tetratricopeptide repeat 39 91 - -
Cec11g1716 708 Pfam Tetratricopeptide repeat 650 693 - -
Cec11g1716 708 SUPERFAMILY TPR-like 512 697 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0473 Cec-Chr5:3786298 Cec11g1716 Cec-Chr11:31412841 1.30E-162 dispersed
Cec08g1713 Cec-Chr8:28273658 Cec11g1716 Cec-Chr11:31412841 2.00E-147 dispersed
Cec11g1716 Cec-Chr11:31412841 Cec07g0156 Cec-Chr7:1670563 2.00E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1716 K21843 - csv:101206641 1338.55