Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1771 ATGACTCACGGACATTGGAAGGTTGTAATAAACAGACTCCTCCTCTCCCGGAAGATTATGTCTGGAAGAAATCGAGGACCGCCCATCCCACTAAATGGTGTGCCTCACGGTGGACTACCACCAGTTCGTGAACCTCCTTTTGCCAGAGGTCTTGGGCCATTGCCACATCCAGTGCTTCTTGAGGAAATCAGGGAATCACAGTATGGGATGCATCCAGGGTCCCTTCCTCCGCACCCTGTAATAATTGAGGAGCGTCTTGCTACCCAACATCAAGATATTCAAGGTCTTCTTCTTGACAACCAGAGGCTAGCTGCGACCCATGTTGCGCTTAAGCAGGAACTAGAAGCAGCCCAGCATGAGTTGCAACGCATGGCTCATGTTGCTGATTCCTTACATGCAGAAAGGGACATTCAGATGAGAGAATTATATGAAAAATCGGTAAGACTAGAGGTTGATATGCGAGGAGTTGAGACTATGCGAGCAGAGCTTCTTCAAGTTCATTCTGATGTCAAGGAATTAACTGCTGCAAGGCAGGAGCTCACTGGGCAAGTGCAAGCAATGACACAAGATCTAACTAGAATTACTGCAGATTTGCAGCAGGTCCCTGCTCTGAGGGCAGAAATTGAAACTGTGAAGCAGGAATTACATCGTGCTAGAGTTGCTATTGAGTATGAAAAGAAGGGATATGCGGAGAATTATGAACATGGTCAGGTTATGGAGAAGAAACTGATTTCAATGGCCAGGGAGTTGGAGAAACTTAGAGCTGAGGTTGCTAATGCAGAGAAGAGAGCTCATGCTTCTGCTGCTGTTGGTGGAAATGCTGCTGCTGGGTATGGTGCAAATTATGGCAATGCTGATGCTGGATATGCGGGAAATCCATATTCTACCAATTATGGCCTGAACTCCGTGCAGTCTGGTACTGATGGTTATCCTCCATATGGACCTGGATCTGTTCCCTGGGGTGCATATGACATTCAACGGGCTCAAGGACATAGATAG 999 47.15 MTHGHWKVVINRLLLSRKIMSGRNRGPPIPLNGVPHGGLPPVREPPFARGLGPLPHPVLLEEIRESQYGMHPGSLPPHPVIIEERLATQHQDIQGLLLDNQRLAATHVALKQELEAAQHELQRMAHVADSLHAERDIQMRELYEKSVRLEVDMRGVETMRAELLQVHSDVKELTAARQELTGQVQAMTQDLTRITADLQQVPALRAEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLISMARELEKLRAEVANAEKRAHASAAVGGNAAAGYGANYGNADAGYAGNPYSTNYGLNSVQSGTDGYPPYGPGSVPWGAYDIQRAQGHR 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31889469 31899525 - CePI673135_11g017710.1 Cec11g1771 216983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1771 332 PANTHER PROTEIN FLX-LIKE 2 20 303 IPR040353 -
Cec11g1771 332 Coils Coil 170 190 - -
Cec11g1771 332 Coils Coil 236 270 - -
Cec11g1771 332 Coils Coil 100 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1771 K27811 - - csv:101204235 571.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0563 Cec-Chr8:16688094 Cec11g1771 Cec-Chr11:31889469 1.90E-18 dispersed
Cec11g1320 Cec-Chr11:27422465 Cec11g1771 Cec-Chr11:31889469 3.10E-17 dispersed
Cec03g0028 Cec-Chr3:312804 Cec11g1771 Cec-Chr11:31889469 1.10E-35 transposed
Cec11g0546 Cec-Chr11:5985956 Cec11g1771 Cec-Chr11:31889469 3.40E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g22 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01679 Cam11g1746 Cec11g1771 Cco11g1771 Clacu11g1903 Cmu11g1714 Cre11g2128 . Cone9ag0240 . . Lsi04g01973 Csa04g02252 . Cme07g00489 . . . . Bpe11g00435 . . Bma14g00275 . . . . . . . . . . . . . . . . . . . . . . . . . . .