Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1808 ATGAATTGCAGTGTGAATGAAAATGAAATCAAAGGCTTGGGGTTTATAAAAATAATCCCAAAAAATGGGGAAGGCAGACTATCTTGCTTTCTTGGCTTGGTGACCAACCCTGAAGAAGCCACTGCAGATGACGATGAAGATGATGATGATGATGCGACGGGAAAACGCTGTTTCAATTTTCCTTTGGACTTTTCTTCACATCGGTCTTGCATATGCATAAGTGAGGGTTGGATGATGGCTTTGAGGGATCTGCAAGCGAAGACATTATTTTTAGGGAGGTTTTCTTTGGCAACAGCTCTAGCCATTCCAATAGGAGGTGTCCTCACAAGTTATTCATACTCAAGAAATATAAAGCTTGATGAATGTTACAATGCTACGGAGAATATGAGGACCAGTTCTGCACCTAATAGTCTGCCATGCAAATGGACTTCAGTGGAAGGCGACAACATGAATGCAAGTGCTAAGCGAATAAAACTGTCAACTGATGAAGCCTCTGATTCTGTACCCAATCTAGTTAAGGTTATGAAATCATCAGATGGTTTAAGAGAACCTGTTTCCACTAATTGCTGTCCAGCTGAGGACTGTGATTCTGAATCATTTACATTCCACATTGTAGAATCTTCTAGACAGGGAATTATATCAAGTTGCTATCTGCTTAAGCACTTTGTTGAAAGGCACAATAATCTGGGTGATCCTGATGCCTCCAAACGAACATCACTGAATTTAGAAGGTAACGATGAACCCAATGTGGTGAATAAAGTTAGTGCTTCGCCTGTTTCCCAAGAGAGCTCCATGACCAGGCTGTTGGTAGCAAGTCCTGATACACTCAACGAGAAGTTTGGATTGCCACTACATCTAGAGGTAGGACAAATGAAATTTCTATGTCCAGAACTGGATACTTCCTTGAAGACAGATTTGAGTAGGGATCCCCGTCCTCTTCTCCACTACCATGTTGTTCACCTGTTTATTGCAGCTGGATGGTCTATTGAAAGGGTCAAAAGACCTTGCCGGCGTTATATGGAAACGATGTACAGGTCACCCCAGGGAAGAGCCATTCGTGAATTTTCCAAGGCTTGGAGGGTTTGTGGTGAACTTCTGTTTGCTGATAAGTGTAGTTTTGCAAAGAAAGTTGACAGCAGAGAATGGACTGGCATTCATCAATTCTTATTTGATCTTTCTGACACATTGTTACAGGTTGGGAAGGAAATGAATCAATTAGGGGCTACAACTTCATTGGCTCATTGCTGGGCTATTCTAGATCCCTATGTGGTGGTTGTGTTCATTGACAGAAAGATCGGTACCCTTAGGAAGGGAGATTTAGTTAGAGCTACCTGTAGTATTGGCGTTAATGGGAACAATAAGACCGATACTTTCGTGACATTAAAAAATGAAGACAGTAGTATTTGTAACCTATCTGCTGACAAAAACCCGTCACCACCACATGATAATTCACCATCTGCCAAGAGTGCATTGACAGAGGCGGCATTAAAAGATCTTGATGGGGGCAATTGTGCTTTTGATGAGCAAATCTGTGATACAAGTTTCTCCAATTACTATGGGCATACAGAAGATGGAACAATGAAATTTCCGACAAAGGTGTCTAATTATGACCCCAATTTGGGGAACAGTCTGAATTGCATGGGCAGTCATTGTAATGAACCTGGAAACAAGATAGACACTGAGGATTTAACTTCATTACCTGCTTATTTTTCAGGCTCGACCCGCAAACCTAGATGTCTGGCTGATGGTCCTGTTCCATCTGGAAATTCAGATAATGTTGTCAGAATTTCTGGCCTTACATCTCCCGATGAGGATAGCACTTTGTGTTGTTCGGATGAACAGAGCTCTGAAAATCATGTTGAAAAGCCTAATGAAATGGTGAAAAATGTACTAACGTGTTCCCTAGTAGAAGAAAAAAAGGTGGAAGTCCCACTTGATGATAAGGTGGAGAATAATTTGGAAGAATCTCTGAATGACTGTCCAAACTATACAAGTGACGATTTATCTCATTCTTGTGCCTCAGGGGTTGTACAGAAGTCTTCACAAAATGAAGAAGGTGGGCTGCACTTTTCAGCTTCAATGTTCAAAACAGAGAATAAAGTTTCTGCTACACATTCTATTTTGAAGAAGAAAGGACGTCGAAAGTGTAAAAAGATATCTGAAATTAAACCTACCTTGCCACCTCATATTGATATTGTGAGTGTGACTCCTGGAAAGAAAACTGAGTTGTGGGATATTGATGGGAATTGCTCTCAGTTAGATATGATAGAAGACCAGAAGTCCCATATAGCTGATACTAAAAACGTGGACGATCACGAGAAGAGCTTGTCTCTCAGTCCTGTTTCATGCCATTCTGAGAGGAAAGGTTCAAAGTTCAATAAGAATTTTGACAGTCTTAAAGGTTCAAAAACCAGAAAGAAGAAATCGAATGAATGTCAAATTGAAGATGACGATCTATTAGTTTCAGCCATTATTAGAAACAAAGATGTCAGTTCAAGTGCTGCTGGATCTTCCCATGTAAGGAAATACTTAAAATCTAGAGCAAAAATGAACCGCAAAAGACAAAAGAGTAGTTGTAAGTTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCCATAGGGGCTAGAACAGTGTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCGAATGATATAATCCAATACCAAAGCCCTAAGGATGACAGTGTAGTTAAATATGGTAGAATCACTGGAGATGGCATCATCTGCAATTGCTGCGGTGAGCTACTCTCAATATCTGAATTTAAAAGTCACGCAGGTTTCAAATTTAATCGCCCTTGTTTGAATCTTTTCTTGGACTGTGGGAGGCCTTTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAGTATAAGACAAGGAGAAGTAGGACCAGAACTGTTCAAGTTGATGAAGATGATCGAAATGATGATTCATGTGGGATTTGTGGTGATGGTGGAGAACTAATCTGCTGTGATAATTGCCCTTCTACATTCCATCATTCTTGTTTGTCAATTCAGGAACTCCCTGAAGGCAACTGGTATTGCTTAAATTGTACATGCCGGATATGTGGTGGTCTTGTGAATTATGAAGAGACTTCAAGTTCGTCTGATGCGCTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGGGCGATGCCTGAAACAAAAAGACATCGATTCTGGAGTAGAATCTCATGTTTGGTTTTGTAGTGGGAGTTGCCAGAAGATTTACACAGCTCTTCAATCACGACTTGGATTGATTAATCAGTTTGCCAATGGGTTTTCATGGATGCTTCTTAGATGCATTCATAACGACCAGAAAATTCTGTCTACCCCACGCTTAGCTATGATGGCAGAATGTAATTCCAGATTAGTAGTGGCTCTTACCATCATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGGACAGGAATTGATATGATACCACATCTGGTGTACAGCTGGAAGTCTAGTTTTCCTCGTCTGGACTTTCATGGATTTTACACTGTGATACTAGAGAAAGATGATGTCCTGCTATGCGTAGCTTCTATCAGAGTACATGGATCAGAAGTGGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGACGCCAAGGAATGTGTAGGCGTCTACTGAATGCTATTGAAGAGATGCTATTGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTTTAGTGGAGACATGGACTGAAGGTTTTGGCTTTGTACCTGTGGAAAATGATGAGAAACAAAGTCTTCACAGGTTCAATTTGATGGTGTTTCCCGGAACAATACTCCTAAAGAAGGATCTGTATTTAAGTGGCCAAAATACAGAGACAACAGAAGGAATTCATTCAGGAGTACAACTTGACAGCGATGCTAAACGACAATGCAATTCCAACGAAGCATGTCCTAGAATGGAAATAAAATGTTCAAAATATCAAGAATTGCAAGAACACAATCATGAAAAGATGATGGACGACCACGAAGGAAATCCAGCTCTTCTGATTGATTCATCTACATTGCAGGTGGTTGAATCAAATGGAATGGATACTTCTTCAGGACAAAAGTCTGTTGAGTCAGTGCCTCAACCTGATGGAAACTGTTGCACTGACATAGTTGGTGCCACAACCGAAACCCGCACGCATGAGGGGAAAGAGTCGTTAGAGGTAGAAGTTGGCGCAAAACGTGACATTCAGCTTTCGGAAGGAAAGAGCTGGGATGAAGGAGTCCATGTAGCCACGATGACAAGATTTGTAGAACCTGTTGTTCTAACTTAG 4338 40.96 MNCSVNENEIKGLGFIKIIPKNGEGRLSCFLGLVTNPEEATADDDEDDDDDATGKRCFNFPLDFSSHRSCICISEGWMMALRDLQAKTLFLGRFSLATALAIPIGGVLTSYSYSRNIKLDECYNATENMRTSSAPNSLPCKWTSVEGDNMNASAKRIKLSTDEASDSVPNLVKVMKSSDGLREPVSTNCCPAEDCDSESFTFHIVESSRQGIISSCYLLKHFVERHNNLGDPDASKRTSLNLEGNDEPNVVNKVSASPVSQESSMTRLLVASPDTLNEKFGLPLHLEVGQMKFLCPELDTSLKTDLSRDPRPLLHYHVVHLFIAAGWSIERVKRPCRRYMETMYRSPQGRAIREFSKAWRVCGELLFADKCSFAKKVDSREWTGIHQFLFDLSDTLLQVGKEMNQLGATTSLAHCWAILDPYVVVVFIDRKIGTLRKGDLVRATCSIGVNGNNKTDTFVTLKNEDSSICNLSADKNPSPPHDNSPSAKSALTEAALKDLDGGNCAFDEQICDTSFSNYYGHTEDGTMKFPTKVSNYDPNLGNSLNCMGSHCNEPGNKIDTEDLTSLPAYFSGSTRKPRCLADGPVPSGNSDNVVRISGLTSPDEDSTLCCSDEQSSENHVEKPNEMVKNVLTCSLVEEKKVEVPLDDKVENNLEESLNDCPNYTSDDLSHSCASGVVQKSSQNEEGGLHFSASMFKTENKVSATHSILKKKGRRKCKKISEIKPTLPPHIDIVSVTPGKKTELWDIDGNCSQLDMIEDQKSHIADTKNVDDHEKSLSLSPVSCHSERKGSKFNKNFDSLKGSKTRKKKSNECQIEDDDLLVSAIIRNKDVSSSAAGSSHVRKYLKSRAKMNRKRQKSSCKLLLRSLGNGEKNYKDGKWYAIGARTVLSWLLDAGVISSNDIIQYQSPKDDSVVKYGRITGDGIICNCCGELLSISEFKSHAGFKFNRPCLNLFLDCGRPFMLCQLQAWSTEYKTRRSRTRTVQVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSIQELPEGNWYCLNCTCRICGGLVNYEETSSSSDALKCSQCEQKYHGRCLKQKDIDSGVESHVWFCSGSCQKIYTALQSRLGLINQFANGFSWMLLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSEVAEMPLIATCSKYRRQGMCRRLLNAIEEMLLSFKVKKLVIAAIPSLVETWTEGFGFVPVENDEKQSLHRFNLMVFPGTILLKKDLYLSGQNTETTEGIHSGVQLDSDAKRQCNSNEACPRMEIKCSKYQELQEHNHEKMMDDHEGNPALLIDSSTLQVVESNGMDTSSGQKSVESVPQPDGNCCTDIVGATTETRTHEGKESLEVEVGAKRDIQLSEGKSWDEGVHVATMTRFVEPVVLT 1445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32240997 32255478 - CePI673135_11g018080.1 Cec11g1808 217020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1808 1445 SUPERFAMILY FYVE/PHD zinc finger 971 1035 IPR011011 -
Cec11g1808 1445 FunFam Increased DNA methylation 1 984 1036 - -
Cec11g1808 1445 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1180 1265 IPR016181 -
Cec11g1808 1445 Pfam PHD-finger 994 1033 IPR019787 -
Cec11g1808 1445 MobiDBLite consensus disorder prediction 1367 1388 - -
Cec11g1808 1445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 984 1035 IPR013083 -
Cec11g1808 1445 Gene3D - 1164 1278 - -
Cec11g1808 1445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1036 1093 IPR013083 -
Cec11g1808 1445 Pfam Tify domain binding domain 916 966 IPR032308 -
Cec11g1808 1445 CDD NAT_SF 1185 1245 - -
Cec11g1808 1445 SMART PHD_3 993 1034 IPR001965 -
Cec11g1808 1445 SMART PHD_3 1035 1089 IPR001965 -
Cec11g1808 1445 PANTHER PHD FINGER FAMILY PROTEIN 152 1351 - -
Cec11g1808 1445 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1127 1291 IPR000182 GO:0016747(InterPro)
Cec11g1808 1445 ProSiteProfiles Zinc finger PHD-type profile. 991 1036 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1808 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2280 Cec-Chr5:34163951 Cec11g1808 Cec-Chr11:32240997 2.10E-79 dispersed
Cec06g0623 Cec-Chr6:7007543 Cec11g1808 Cec-Chr11:32240997 4.80E-108 dispersed
Cec11g1808 Cec-Chr11:32240997 Cec09g0686 Cec-Chr9:6056345 7.80E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30576 PF16135 TDBD 1.10E-14 No_clan Cec TR