Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1816 ATGGGAAAGTTTCCCTTTCTGTTTCCTTTCTTGTTGTTTGCTCTGATAGTTTCTGGAAAGCATGAAACCGAAAGAAATGTGAGTGCAACAATGGTTGATAATGGAAAGGGCAGAATAGGGGCCATTGTAGATCTGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCTTATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGTTGGAAATGAGAATCAGATTCCTGTACTAGCATTAGCTAATGAAATACCAAAGTGGGCAACTGAGAGGTTCAAATTTTTGGTTCAGGCTTCTCCCTCCCTGTTAAATCAAATGAAGGCTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTGATCTTGTATATGCCCTCAAAGATGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCACAGTTTGATTCTGATTTATTTTCTAAAGAACTGGACAAGCTAAGAAGAGGGTCATGCAGAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGTATCTATTTGAGATAGCAAACAAGATGGGAATGATGGGAAAGGACTATGTATGGATCACCACTGATACTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTATCAACTCTATGCTACAAGGAGTTGTTGGAGTCAAGAGCTACTTCCCAGAAAGAAATCCTCCATATCATGAATTTTATCATCGGTTTTCTCAAAGGTTTAGATTAGAGTATTTTGATGAGGACAACAACGAGCCTGGTATTTTTGCAGTACAGGCTTATGATGCTGCAATGACAGCGGCTATGGCTATGAGTGAAATCCAAGAAAAGGGTAATCACTTGTTAGAAAAAATAAAGCTCACTCACTTTCAAGGACTCAGTGGAAAGATTCAGTTTAAGGACAGAAAATTAGCCCCAGCTGATACTTTTCAGATTATCAATGTGGTGGGGAGAAGTTATAGGGAACATAGCTTCTGGTCTGATAAATCAGGCTTCTCAAGAGAGCTGAGGGAAAATTCATCTTCTAGCTTGTCGATGAAGAATCTTGGTGAAATGTTTTGGCCAGGTGGATCTTCAAAAACACCAAGGGGATGGGTCATACCAATGGATGCCAATTCATTGAGAATTGGGGTGCCAGTTAGTTCCATGTTCAAACAGTATGTGCATATGGGAAAAAATTTATTCTTCAATGGACTTGCAATTGATCTGTTTGAAGCAACTTTAGACTACCTTCCTTTTGCTCTACCACGTGTCTTCTGTCCTTTCAATGGAACTTATGATGATTTAGTGCAAGGAATCTACTTGAAGAAATATGATGCAGCAATAGGTGACATAGCAATAACAACAAAACGCTTAGACCATGCAGAATTTACACATCCTTACTCTGAAGCAGGATTGGTGATGATAGTTCCTACCAGAAAAGACACAAGTAACAAAGCATTGTTGTTCACAAAGCCCTTTACTGTGACCATGTGGATTCTAATTGCTGTGGTAACTGCCTACAATGGCTTCGTCGTGTGGTTCATAGAACGAAATCACTGTCCTGAACATGAAGGTTCAATGTTTGATCAAGCTGGAGCTATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTGCACGGTAATAGGCTGCATAGTAACTTATCGCGGATGGCTATGGTGGCTTGGCTATTTATGGCACTTGTGATAACTCAGACATACACAGCTAATCTTGCTAGCATGCTCACTATTCAAAAGTTTGAAGCGACGATATCGAATATTGAGACTCTCCATAGAATAAATGCATCTGTGGGAAACGGAAGAGGAACCTTTGTCCAAAGATATTTGGAAGAAGTTTTAGACTTTCCAGCCAAAAATATAAAAGGCTACAGTACCCCAAACGATCTAGTCAACGCTCTCAGAAACCAGGAGATAGCAGCTGCATTTCTTGAAGTCCCTTTTGCAAAATTATTCCTTGCAAGATTTTGCAAGGAATTCGTGATTTCTGGACCAACCTACCTTGTTGGAGGATTTGGATTTGCATTTCCGACTGGCTCTCCGCTGTTACGAGATTTTAACAAAGCACTGCTTAAGGTATCTGAAACTGGGGAGTATAGAAAGTTGGAGGAAAGCATGATTGCTAGTGAGAAATGTGAGGATAGTAATGCAAAAGATGAAAGTTCAAGCCTTAGCCCCAACAGCTTCTTTTTACTATTTTTATTGAGTGGAGGAGTATCAACAATGGCATTAACATTGTACATTATCAATGCTCATAAATCTTGTCTTCAACATAATGCTATTTGGAGATTAATGTTAGCTGTAATTAAGGGCTGGAGAAATCACAGCAAGGGATTTTCTCGACAAGTAAGCGATGAGCCACAGACCGTCCCAAAGAACTTCCCAAAGGCTACAAACTTGCAAATCCAGGTCTAG 2592 39.7 MGKFPFLFPFLLFALIVSGKHETERNVSATMVDNGKGRIGAIVDLSSRIGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPNLAAKELISVQQVHALIGPQTWEMASVVAEVGNENQIPVLALANEIPKWATERFKFLVQASPSLLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVYALKDVGAEVSEFVGLSQFDSDLFSKELDKLRRGSCRIFVVHMSFKLALYLFEIANKMGMMGKDYVWITTDTFTSLAHSFNVSINSMLQGVVGVKSYFPERNPPYHEFYHRFSQRFRLEYFDEDNNEPGIFAVQAYDAAMTAAMAMSEIQEKGNHLLEKIKLTHFQGLSGKIQFKDRKLAPADTFQIINVVGRSYREHSFWSDKSGFSRELRENSSSSLSMKNLGEMFWPGGSSKTPRGWVIPMDANSLRIGVPVSSMFKQYVHMGKNLFFNGLAIDLFEATLDYLPFALPRVFCPFNGTYDDLVQGIYLKKYDAAIGDIAITTKRLDHAEFTHPYSEAGLVMIVPTRKDTSNKALLFTKPFTVTMWILIAVVTAYNGFVVWFIERNHCPEHEGSMFDQAGAMLCSSFTTLFSLHGNRLHSNLSRMAMVAWLFMALVITQTYTANLASMLTIQKFEATISNIETLHRINASVGNGRGTFVQRYLEEVLDFPAKNIKGYSTPNDLVNALRNQEIAAAFLEVPFAKLFLARFCKEFVISGPTYLVGGFGFAFPTGSPLLRDFNKALLKVSETGEYRKLEESMIASEKCEDSNAKDESSSLSPNSFFLLFLLSGGVSTMALTLYIINAHKSCLQHNAIWRLMLAVIKGWRNHSKGFSRQVSDEPQTVPKNFPKATNLQIQV 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32353432 32356691 + CePI673135_11g018160.1 Cec11g1816 217028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1816 863 Pfam Ligand-gated ion channel 764 796 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec11g1816 863 Gene3D - 314 435 - -
Cec11g1816 863 FunFam Glutamate receptor 150 311 - -
Cec11g1816 863 FunFam Glutamate receptor 540 678 - -
Cec11g1816 863 Gene3D - 541 670 - -
Cec11g1816 863 Gene3D - 671 773 - -
Cec11g1816 863 Gene3D - 151 309 - -
Cec11g1816 863 SUPERFAMILY Periplasmic binding protein-like II 412 763 - -
Cec11g1816 863 PIRSF IGluLR_plant 2 340 IPR017103 -
Cec11g1816 863 PIRSF IGluLR_plant 332 853 IPR017103 -
Cec11g1816 863 Pfam Receptor family ligand binding region 55 377 IPR001828 -
Cec11g1816 863 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 826 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cec11g1816 863 SMART GluR_14 435 768 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec11g1816 863 Gene3D - 436 540 - -
Cec11g1816 863 CDD GluR_Plant 434 766 - -
Cec11g1816 863 Gene3D - 36 150 - -
Cec11g1816 863 Pfam Bacterial extracellular solute-binding proteins, family 3 446 548 IPR001638 -
Cec11g1816 863 CDD PBP1_GABAb_receptor_plant 38 396 IPR044440 -
Cec11g1816 863 SUPERFAMILY Periplasmic binding protein-like I 38 427 IPR028082 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1816 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g1815 Cec-Chr11:32345082 Cec11g1816 Cec-Chr11:32353432 0.00E+00 tandem
Cec11g1816 Cec-Chr11:32353432 Cec11g1817 Cec-Chr11:32359830 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .