Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1817 ATGATGACTCCCGACCAACCTAGTCAATCGTTTATTCATTCTTTATTCACTCTTGTAGTTTCTGGAGAGCATGAAACTGAAGGAAACACAAACTCGACGATGAATGATAGTGGAAAGGGCAGAATAGGGCTCATTGTAGACAAGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTATAGAAGATTTTAACTCCTTCAGCAATCAAAGTTTTAGTCTTGTCATCAGAGACTACAAAAGTGATCCAAATCTTGCAGCTCTTGAAGCTAATGATCTCATCAGTATGCAACAAGTTCAGGTTCTTATAGGACCACAAACTTGGGAAGCTGCATCCATAGTTGCTGAGGTTGGAAATGAGAAACATGTTCCAGTTCTAACGTTAGCTAATGAAATACCAAAATGGGCGACCGAGAGGTTCAAATTTTTGGTTCAAGCTTCTCCCTCCCAACTACATCAAATGAGGGCTATAGCTGGTATTATCAGTTCGTGGGATTGGCACCTTGTCAATGTAATATATGAAGATAGAGATTTCTCAACCACCAGAATATTTCCTCATCTTGTACATGCCCTCCAAGATGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCTCAATTTGATTTTGATTTATTTTCCAAAGAATTGGAGAGGCTAAGAAGAGGGTCAAGCAGAATATTTGTAGTTCATATGTCTTTCAAGTTGTCACTGTGTCTATTTGAGATAGCAAAAGAGATGGGAATGATGAAAAACGACTATGTTTGGATCACTACTGATTCTTTCACCAACCTTGCACATTCTTTCAATGCTTCTATCAACTCTCTACTACAAGGAGTTGTTGGAGTCAAGAGCTTCTTCCCTGAAGACAATCCTCAATTTCATGAATTTTATCTTCGGTTTTGTCAAAGGTTTAGATTAGAGCATTCTGACGAGGACAATCACGAGCCTGGTATTTTTGCGATACAGGCTTATGATGCTGCAAGGACAGCAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGGAATCACTTGTTGGAAAAAATAAAGCTCACTGATTTTCAAGGACTCGGTGGAAAGATTCAGTTTAAGGACAGAAAACTAGCCCTATCTGATACTTTTCAGATCATTAATGTGATGGGGAGGAGTTATAGGGATTTAGGCTTCTGGTCGGACAAGTTAGGCTTCTCACGAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTTGATGAAGGATCTTGGCGAAGTGTTTTGGCCCGGTGGATCTTTGATAACTCCAAGGGGATGGGTTGTACCAACAGATGCCAATTCATTGAGAATTGGGGTGCCTACTAGTTCCATGTTCAGACAGTATGTACATGTGGAAGAAGATCCTTTGGGAAATAATTTATCCTTCAATGGACTTGCAATTGATCTGTTCAAAGCAACCCTAGACAACCTTAACTTCCCTCTGTCCTACCACTTTTTTCGTTTCGATGGACCATATGATGATTTGGTGAAGCAAATCTACCTGAAGAACTTCGATGCAGCCGTAGGTGATATAGCAATATTATCACGGCGCTATGAACATGCGGAGTTTACGCATCCTTACTCAGAAGCAGGACTGGTGATGGTAGTTCCTACCATAAAAGATTCAAGTAATAGAGCATTGATGTTCACAAAGCCCTTTACAGTGACCATGTGGTTTGCAATTGCTGTGATAAATGTCTACAATGGCTTTGTAGTCTGGTTCATAGAACGCAATCGCTATCCCGGTCATGAAGGTTCGATGTTTAATCAAGCCGGAACCATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTACATGGTAATATGCTGCACAGTAACTTGTCTAGGATGACCATGGTGGTTTGGCTATTTATGGCACTTGTGATAACTCAAATATATACTGCTAATCTTACAAGCATGCTCACTATTCAAAAGCTCGAACCGACGATAACGAATATCGAAACTCTCCAAAGGGCAAATGCGTTAGTCGGATTTGGCAGAGGATCATTTGTCAAAAGATATTTGGAAGAAGTCTTACACTTTCGTGCCGAAAACATAAGAAACTACTCTACACCTGATGATTATGCCGAAGCTCTCAGAAAGCGAGAGATAGCAGCTGCTTTTCTTGAAGTCCCTTTTGTAAAAATATTCCTTGCAAGATTTTGTAGGGAATTCATGGTATCTGGACCAACCTACAAAGTTGGAGGATTTGGATTTGCATTTCCGAGAGGCTCTCCGCTGTTAACGGATATTAACGAAGCATTACTCAAGGTATCTGAAACTGGGAAGTTCAGAGATTTGGAAGATAGCATGATTGCTAATGAGAAATGTGAGGATGGGGATGCAAAGGGTGAAAATTCAAGCCTCAGCCCCAACAGCTTCTTCATATTATTTGTATTGAGTGGAGGAGTATCAACCATAGCTCTTACATTATACATCTTTAATGCTCATAACTTCAGTTTTCAACAGAATACCATTTGGAGATTAATGATAGCTGTAATGAGACACTGGGGAAAGCACAGGAGGCAATTTTCTCGACGAGCAAGTGATGAACCGCAAATGACTGTCTCAAATAACTTCTCGAACGCCACGAACTTGCAAATTCAGGTCTAG 2628 40.64 MMTPDQPSQSFIHSLFTLVVSGEHETEGNTNSTMNDSGKGRIGLIVDKSSRIGKEEILAMQMAIEDFNSFSNQSFSLVIRDYKSDPNLAALEANDLISMQQVQVLIGPQTWEAASIVAEVGNEKHVPVLTLANEIPKWATERFKFLVQASPSQLHQMRAIAGIISSWDWHLVNVIYEDRDFSTTRIFPHLVHALQDVGAEVSEFVGLSQFDFDLFSKELERLRRGSSRIFVVHMSFKLSLCLFEIAKEMGMMKNDYVWITTDSFTNLAHSFNASINSLLQGVVGVKSFFPEDNPQFHEFYLRFCQRFRLEHSDEDNHEPGIFAIQAYDAARTAAMAMSEIQEKGNHLLEKIKLTDFQGLGGKIQFKDRKLALSDTFQIINVMGRSYRDLGFWSDKLGFSRELRENSSSSSLMKDLGEVFWPGGSLITPRGWVVPTDANSLRIGVPTSSMFRQYVHVEEDPLGNNLSFNGLAIDLFKATLDNLNFPLSYHFFRFDGPYDDLVKQIYLKNFDAAVGDIAILSRRYEHAEFTHPYSEAGLVMVVPTIKDSSNRALMFTKPFTVTMWFAIAVINVYNGFVVWFIERNRYPGHEGSMFNQAGTMLCSSFTTLFSLHGNMLHSNLSRMTMVVWLFMALVITQIYTANLTSMLTIQKLEPTITNIETLQRANALVGFGRGSFVKRYLEEVLHFRAENIRNYSTPDDYAEALRKREIAAAFLEVPFVKIFLARFCREFMVSGPTYKVGGFGFAFPRGSPLLTDINEALLKVSETGKFRDLEDSMIANEKCEDGDAKGENSSLSPNSFFILFVLSGGVSTIALTLYIFNAHNFSFQQNTIWRLMIAVMRHWGKHRRQFSRRASDEPQMTVSNNFSNATNLQIQV 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32359830 32364135 + CePI673135_11g018170.1 Cec11g1817 217029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1817 875 Pfam Bacterial extracellular solute-binding proteins, family 3 465 559 IPR001638 -
Cec11g1817 875 SUPERFAMILY Periplasmic binding protein-like II 418 774 - -
Cec11g1817 875 Gene3D - 442 551 - -
Cec11g1817 875 SUPERFAMILY Periplasmic binding protein-like I 41 432 IPR028082 -
Cec11g1817 875 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 837 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cec11g1817 875 FunFam Glutamate receptor 551 689 - -
Cec11g1817 875 CDD PBP1_GABAb_receptor_plant 41 402 IPR044440 -
Cec11g1817 875 Gene3D - 333 441 - -
Cec11g1817 875 FunFam Glutamate receptor 435 550 - -
Cec11g1817 875 Gene3D - 552 693 - -
Cec11g1817 875 Gene3D - 727 784 - -
Cec11g1817 875 Gene3D - 39 157 - -
Cec11g1817 875 Pfam Ligand-gated ion channel 775 807 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec11g1817 875 PIRSF IGluLR_plant 7 874 IPR017103 -
Cec11g1817 875 Pfam Receptor family ligand binding region 58 381 IPR001828 -
Cec11g1817 875 CDD GluR_Plant 440 777 - -
Cec11g1817 875 FunFam Glutamate receptor 156 317 - -
Cec11g1817 875 SMART GluR_14 441 779 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec11g1817 875 Gene3D - 158 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1817 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1651 Cec-Chr8:27846270 Cec11g1817 Cec-Chr11:32359830 9.60E-73 dispersed
Cec08g1652 Cec-Chr8:27854387 Cec11g1817 Cec-Chr11:32359830 1.00E-75 dispersed
Cec11g1815 Cec-Chr11:32345082 Cec11g1817 Cec-Chr11:32359830 0.00E+00 dispersed
Cec11g1817 Cec-Chr11:32359830 Cec11g1930 Cec-Chr11:33463121 3.60E-103 dispersed
Cec11g1816 Cec-Chr11:32353432 Cec11g1817 Cec-Chr11:32359830 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .