Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1856 ATGGAACAAAACTACACTGTACCTGAGGCATACTTAGAGTCTGAACAAGATGTCTCTCTCAAGCAAAACTGGAAATCTATCTCAACTCAGTCAACAGTCTCGGAAGAGGCGAGCGGTTGCTTCGATTGCAACATTTGCTTAGACTCAGCAGCTGACCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACAAATGGCTTCATGTTCAAATCTCCAGCAATGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATTACTCCCTCCTCTTTGGTTCCCCTCTATGGCCGTGGCACATCATCGAACTCAGATTCTGAATCCAAGAAGTCTCACTTGGGTATTGCTGTACCTCGAAGACCACCACCATCAATGAACACACCGCCCCATTCCATTGCAACCTCTTCATTGCATCCTAGCCAGGAGCTTCATCCAAATTATATCCGCTCGCCCTCACACCCGATCTATCACCAACAATATTTCCCCCAAGCCTACGGTGACTTTGCCTCATATGCACCGTCTTATCTTGGTAATGCCGTGATAACAAGCCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTTACTAGAATTTTTGGTAGCGTGGATGGGAACTTATTGCCATACCCACCATACAACAACTCGATCCCAGGACATGCCAATACCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTTTCCATCTTTCTATTTTGCTGCTTTATTATCTGTCTTCTAAATCAACTTCTTTCATTGGAGTCGGGTGGCGAGAAGGTTGACAGCCATTGCATGCTTAGGTTGACCCCGTTGAGCCAGTTATGCTTTACTTTGTTTCTTGCACTTGATTTTCTCTCTGTTTCTGCTTGGAAGGGGAAATCAGGGTGTGTGAAGATGAGGGGTCCTTTAGGGGCAGTGATTGGGAGGTACCCATCAAGTGATGGAAATGCCCAAATGGGTGGAATCATTAGGCATAATAGAAAATGTAGAGATATTGTATTTCTTGTGATCTTTATAGCTTTCTGGGTGGGGATGGTTGTTAACTCAAGCTTTGGATTTAACCAAGGAAACCCATTAAGGCTTACATATGGACTAGACTACAAAGGAAATGTCTGTGGTGACAAGCATGCTAATCCTGGCCTTCGTGAATTGGAGCTTAAATATTGGTTGAATCCTAATCAGGTTTATCAAAGTGGTCTGAAGGACAGTCAATTTAAGTTGGCGGATGCTCGGAGTATATGCTTGATGGATTGCCCGACTCCTTCAGAAGATTCTCTAAACTGGGTTTGTGATTATCCAGAAGGTGAAATACGCCTCTCAATGGATGATTGGATAGACAGGAACTACGATTACTTTGAGTTCCTTACGCCTGAGATGAGAAACAGTTCTGTTAACCTTCAGGGTCCTTGTTACCCTGTCATTTTTCCTAGTGTAAATGTTTATTGGAGCTGCCAGTTCCTTGCCCGCCCCTCAAATGTATCATTAACACATTGGAAGCAGATGGGTGGAATGAACATTGATGCAGATTTGATCATTGATAAAGCTATTCATAAGTCAACCAACTCTCGATCATCTGTCTTAAAGAGATACATGGCGGATATTGGGAAGTCATGGCCGGTATTGATTGTTTGCGGAGGAATTTTACCTCTATTTTTGGCAGTGATTTGGTTGCTAATGATTCGGCATTTTGTTGCTGCGATGCCGTGGGTAACAGTTGTCCTATTCAACATTCTCATCGTATCGGTCACAATGTTTTATTACCTCAAAGCTGGATGGATAGGAAATGATGCTATAACTCCCATCATTGGTGATCATGATCCCTATGTCCACATATTTGGAAGGGAGCTCAATCATATGCGTGCTGCTGCTGTTCTAATGACTTTTGTTATGGCTGTCTCCGTTCTTACATCAATTGCCATCATCCGCCGAATCATAATGGCAACATCTGTTGCTGCAAAGGTGATTGGAGAAGTTCAAGCACTCATAATCTTTCCAGTCATACCTTATGCCATCCTTGCAATTTTTTATATGTTATGGTTATCAGCTGCGCTTCATCTCTTCAGCTCTGGTCAGGTTGTCCAGAATAATTGCAACTCAAACTGCTGTGCCTACGATCTTGCTTCAAAACGAGTGAACTGCGACCGTTGCTGTGGTTATAGCATCCGTTATACTCCTCATATCGACATTGCCATCTTTTTCCACCTATTTGGTTGTTATTGGGCTACTCAATTTTTTGTAGCATGCTCTTCAACAGTTATTGCAGGTTCAGTAGCCTCCTATTATTGGGCTCGTGGTGAAACTTCGCCCGAAATTCCATTTCTTCCTGTTTTCTCCTCGATGAAACGGTTGGCAAGATATAATCTCGGGTCCATGGCTCTCGGTTCCTTGACTGTGTCCTTCATGGAATCAATTCGTTTCATACTTGAATCTATTCGTCGCAAATTGAAAGTTGCGAGTACAGCACCAGATAGTCGGATTGGCCGAGCAGTGCATAATACGTCTCGGTTTTGCCTGAGATGTATAGAGTGGATCATCAAATCTGTTAACCGCAATGCATACATAATGATTGCGATAACGGGCAAGAGCTTTTGCAAGGCGTCTGCTATTGCGACAGAGTTAATAATTAACAACATCCTTCGAATCGGAAGGGTGAATGTGATTGGAGATGTCATTCTGTTCCTTGGGAAACTGTGTGTCAGCCTCTCAAGTGCTCTTTTTGCTTTCCTCATGTTGGATACCCACAAATACAGATCTGCTCATAACAAGATTTCTTCCCCATTGTTTCCAGTCCTGGTTTGCTGGGGGCTAGGCTATGTGGTTGCTACACTTTTCTTTGGAGTGGTGGAGATGTCCATTGATACAATAATTCTTTCCTTCTGTCAAGATTCTGAAGAACATCAAGGCACAGCTCAGTATGCCCCTCCTCTTCTCATGGAGACTCTCAATGATCAAAATGAGATGCAAAGACTTACACAAGGACCTCCCAGTTCATAA 3030 43.5 MEQNYTVPEAYLESEQDVSLKQNWKSISTQSTVSEEASGCFDCNICLDSAADPVVTLCGHLYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSSNSDSESKKSHLGIAVPRRPPPSMNTPPHSIATSSLHPSQELHPNYIRSPSHPIYHQQYFPQAYGDFASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPPYNNSIPGHANTRMRRQEMQLDKSLNRVSIFLFCCFIICLLNQLLSLESGGEKVDSHCMLRLTPLSQLCFTLFLALDFLSVSAWKGKSGCVKMRGPLGAVIGRYPSSDGNAQMGGIIRHNRKCRDIVFLVIFIAFWVGMVVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHANPGLRELELKYWLNPNQVYQSGLKDSQFKLADARSICLMDCPTPSEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSVNLQGPCYPVIFPSVNVYWSCQFLARPSNVSLTHWKQMGGMNIDADLIIDKAIHKSTNSRSSVLKRYMADIGKSWPVLIVCGGILPLFLAVIWLLMIRHFVAAMPWVTVVLFNILIVSVTMFYYLKAGWIGNDAITPIIGDHDPYVHIFGRELNHMRAAAVLMTFVMAVSVLTSIAIIRRIIMATSVAAKVIGEVQALIIFPVIPYAILAIFYMLWLSAALHLFSSGQVVQNNCNSNCCAYDLASKRVNCDRCCGYSIRYTPHIDIAIFFHLFGCYWATQFFVACSSTVIAGSVASYYWARGETSPEIPFLPVFSSMKRLARYNLGSMALGSLTVSFMESIRFILESIRRKLKVASTAPDSRIGRAVHNTSRFCLRCIEWIIKSVNRNAYIMIAITGKSFCKASAIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSALFAFLMLDTHKYRSAHNKISSPLFPVLVCWGLGYVVATLFFGVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQGPPSS 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32755407 32766955 + CePI673135_11g018560.1 Cec11g1856 217068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1856 1009 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Cec11g1856 1009 CDD RING-HC_AtRMA-like 41 91 - -
Cec11g1856 1009 Pfam Plasma-membrane choline transporter 637 976 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Cec11g1856 1009 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 332 998 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Cec11g1856 1009 SUPERFAMILY RING/U-box 23 96 - -
Cec11g1856 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 104 IPR013083 -
Cec11g1856 1009 MobiDBLite consensus disorder prediction 104 142 - -
Cec11g1856 1009 ProSiteProfiles Zinc finger RING-type profile. 43 90 IPR001841 -
Cec11g1856 1009 SMART ring_2 43 89 IPR001841 -
Cec11g1856 1009 Pfam Zinc finger, C3HC4 type (RING finger) 43 89 IPR018957 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1856 K15377 - - csv:101206929 1379.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1837 Cec-Chr2:36170042 Cec11g1856 Cec-Chr11:32755407 2.40E-44 dispersed
Cec07g0335 Cec-Chr7:3252421 Cec11g1856 Cec-Chr11:32755407 1.30E-38 dispersed
Cec10g1776 Cec-Chr10:32480947 Cec11g1856 Cec-Chr11:32755407 4.50E-22 dispersed
Cec05g1427 Cec-Chr5:16688872 Cec11g1856 Cec-Chr11:32755407 1.40E-07 transposed
Cec10g1277 Cec-Chr10:26908659 Cec11g1856 Cec-Chr11:32755407 2.80E-19 transposed
Cec11g1856 Cec-Chr11:32755407 Cec03g0585 Cec-Chr3:6195448 1.30E-43 wgd
Cec11g1856 Cec-Chr11:32755407 Cec04g2006 Cec-Chr4:38212104 1.90E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g245 . Blo03g01543 . Bda09g00501 . Bpe08g01028 . . . . Cma01g01205 . Car01g01029 Car09g00786 Sed04g3115 Cpe06g00696 Cpe02g00706 Bhi09g03404 Tan01g4406 Cmetu07g1213 . Hepe01g1378 Mch11g1078 . Cla11g01770 Cam11g1835 Cec11g1856 Cco11g1864 Clacu11g1996 Cmu11g1805 Cre11g2214 Cone6ag0138 Cone9ag0163 . . Lsi04g01327 Csa04g02352 . . . . . . . . . . . Cmo01g01257 Cmo09g00862 . . . . . . . . . . . . . . . . . . . . . . . .