Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1895 ATGTTGCAGGCCATGCAACAAGACGCTCTGGACCTTGCGGCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACCGACATTGCCTGTTTCATTAAAAAGGAGTTTGACAGGATATATGGGGGAGGATGGCAATGCATAGTGGGCACTGATTTTGGATCATTTGTGACACATTGTTTTGGGTGCTTCATCTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTCTTTAGGGGCTCTGCTGCCTCAGAAGAAAAAGAACCTGAGCCAACTCAATTTTCTCTCTGTAGCTCCTCTAATCGCCATAACCATTGGTTCAAGGAAGTTGAAAGCTTATTGCAATGGGGGATTTATCTCGATTGCCATCTGGGCTATTTGGAGAAGGATGAAATACGGCGACATGATTCATTCAAGGCATTTGAAGAGATATGCTCAATTGCAGAACAAAAGCAGGTGGATTTTCTACTTCTTGGCGGTGACCTTTTCCATGAGAACAAGCCATCCCGATCAACATTAGTGAAGGCAATTGAGATCCTGCGTCGTCATTGCCTTAATGATAAACCAGTGCATTTCCAAGTTGTTAGCGACCAAACCATGAATTTTCCAAACACATTTGGTCACGTCAACTATGAAGATCCTCATTTTAATGTTGGCTTGCCAGTATTCAGTATTCATGGAAACCACGATGATCCTGCTGGAGTGGACAACCTTTCTGCTGTTGATATTCTCTCTGCATGCAATCTTGTGAACTACTTCGGGAAAATGGTTCTTGGTGGTTCTGGTGTTGGTCAGATCACCCTCTGCCCAATTCTTATCAGAAAGGGTTCAACATCCGTGGCTTTATATGGTCTTGGAAATATTAGAGATGAAAGGCTGAACAGGATGTTCCAGACACCACATGCTGTTCAGTGGATGCGGCCTGAAGCGCAGGAGGGCTGTCAAGTGACAGACTGGTTCAACATTCTGGTACTTCATCAAAACAGAGTAAAGTCAAATCCTAAGAATGCAATAAATGAGCATTTTTTACCTCGCTTCCTGGACTTCATTGTTTGGGGACATGAACACGAATGTTTGGTTGACCCTCTGGAAGTTCCTGGGATGGGGTTTCACATCACACAACCAGGTTCCTCAGTCGCAACATCACTGATTGATGGTGAATCAAAGCCAAAACATGTCCTTTTGCTGGAAATTAAGGGTAATCAATATCGGCCAACCAAGATACCTTTGACATCTGTAAGGCCATTTGAGTACACAGAGATTGTATTGAAGGATGAGCCTGACATTGACTCTAATGATCAGAACTCAATCATCGAACACTTGGACAAAGTGGTTCAAAATTTGATTGAGAAATCTAGCAAAAGGGTTGTAAACAGATCAGAGCTCAAGCTTCCATTAGTCCGCATAAAGGTGGATTACTCTGGATTTATGACAATAAATCCTCAAAGATTTGGTCAGAAATATGTTGGGAAGGTAGCAAATCCGCAAGACATCCTTATATTCTCAAAAGCTTCAAGGAAAGGTCGCAATGAAGTGAAAATTGATGATTCTGAAAGGCTTCGTCCAGAAGAACTGAATCAACAAAATATAGAGGCTTTAGTTGCAGAAAATAATCTGAAAATGGAGATCCTTCCTGTCAATGATTTGGATGTTGCGCTGCACAATTTTGTAAATAAAGATGACAAAATGGCATTTTATTCCTGCGTGCAATACAATCTAGAAGAAACACGAAGTAAAATTGCTCAAGACGCAGATCCTTTGAAGTTTGAAGAAGAAGATTTAATTCTTAAAGACCGAGTCAAGGAGAGGAACACCCGTTCCAAGAATGATACAACATTCACATCATCTGTTCAGTCATCAAAAGATTTCGGCAGTAAAAGTTCCACGGCAGCTGGGTCTGCTGTTTCTTTCAGTGATGATGAGGATACAGTAAAAGCATCTGGGTCAAAATCCACTAGAGGTCGGAAAGTATCATCTAGGGCAGCTGATGACACTTCAATTAAAACTTCCACGCGAGGAAGGGGAAGGGGTAGAGGGAGGGGCACCAGTAGTAGCCTTAAGCAGACAACTCTTGACGCAGCTCTTGGATTTCGCCAATCACAGAGATCTGCGACTGCTACTGTTCGAAGAATAGCCGACACTGATGCTATGAATTCTGCTTCTAGTGGAGAACCAAGGGAAAATGAAGTTGAAGAAATTAACGACAGTTCGGAAAATGACGAAAGTCTTCTCAGCAAAGGAAGAAAGCGCACTGCTCCAAGGGGTAGAGGGAGAGGATCCACTCAGTCTAAACGGGGAAGGAAATCAGACAACTCTGCAGTTCAGAGAACGTTCATGGGTAGAAATGATGCTGATGATGACAGCGAAGATGAAGACAACGCGAGAAAGCTATTAAATAAGTCTCAGCCTCGGGTGACAAGAAATTATGGTGCACTGAGAAGAGCGCCGAACACTAAAAGTGAAGTTGTTCCTATCTACATGAACATCTTTGCGCCGATCATAGTCCAAGAAGTCAACTTCATTCCGACTGTCGAAAGAACTTGTACCTTTGCTGTTGGTGCAATTTGGATTATAGAGAATTTCCAGCTGGTTATCGATAGGACACTGCTGGACTCTCTGCTGATCTGCCAAGATGAGCTCTTGAGAAGTAAAACATGGGAAAATGGAAAGATGGTTTATGATAGATTTTGTACCTTCAGAAAAGGAGCTAATGACAACTGA 2715 42.5 MLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQFSLCSSSNRHNHWFKEVESLLQWGIYLDCHLGYLEKDEIRRHDSFKAFEEICSIAEQKQVDFLLLGGDLFHENKPSRSTLVKAIEILRRHCLNDKPVHFQVVSDQTMNFPNTFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGQITLCPILIRKGSTSVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEGCQVTDWFNILVLHQNRVKSNPKNAINEHFLPRFLDFIVWGHEHECLVDPLEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEIVLKDEPDIDSNDQNSIIEHLDKVVQNLIEKSSKRVVNRSELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASRKGRNEVKIDDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDVALHNFVNKDDKMAFYSCVQYNLEETRSKIAQDADPLKFEEEDLILKDRVKERNTRSKNDTTFTSSVQSSKDFGSKSSTAAGSAVSFSDDEDTVKASGSKSTRGRKVSSRAADDTSIKTSTRGRGRGRGRGTSSSLKQTTLDAALGFRQSQRSATATVRRIADTDAMNSASSGEPRENEVEEINDSSENDESLLSKGRKRTAPRGRGRGSTQSKRGRKSDNSAVQRTFMGRNDADDDSEDEDNARKLLNKSQPRVTRNYGALRRAPNTKSEVVPIYMNIFAPIIVQEVNFIPTVERTCTFAVGAIWIIENFQLVIDRTLLDSLLICQDELLRSKTWENGKMVYDRFCTFRKGANDN 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33173055 33187001 - CePI673135_11g018950.1 Cec11g1895 217107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1895 904 SUPERFAMILY Metallo-dependent phosphatases 119 451 IPR029052 -
Cec11g1895 904 NCBIfam DNA repair protein (mre11) 117 501 IPR003701 GO:0004520(InterPro)|GO:0006302(InterPro)|GO:0008296(InterPro)|GO:0030870(InterPro)
Cec11g1895 904 SMART Dynein_light_2 1 78 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Cec11g1895 904 MobiDBLite consensus disorder prediction 601 799 - -
Cec11g1895 904 Pfam Calcineurin-like phosphoesterase 119 356 IPR004843 GO:0016787(InterPro)
Cec11g1895 904 Gene3D Mre11, capping domain 413 511 IPR038487 -
Cec11g1895 904 FunFam Double-strand break repair protein 413 511 - -
Cec11g1895 904 CDD MPP_Mre11_N 119 381 IPR041796 -
Cec11g1895 904 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 101 778 - GO:0000014(PANTHER)|GO:0000723(PANTHER)|GO:0000724(PANTHER)|GO:0006303(PANTHER)|GO:0007095(PANTHER)|GO:0030870(PANTHER)|GO:0035861(PANTHER)|GO:0042138(PANTHER)|GO:0097552(PANTHER)
Cec11g1895 904 MobiDBLite consensus disorder prediction 674 722 - -
Cec11g1895 904 FunFam Dynein light chain 1 79 - -
Cec11g1895 904 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1 78 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Cec11g1895 904 Pfam Dynein light chain type 1 1 77 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Cec11g1895 904 MobiDBLite consensus disorder prediction 607 640 - -
Cec11g1895 904 SUPERFAMILY DLC 3 78 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Cec11g1895 904 FunFam Double-strand break repair protein 108 412 - -
Cec11g1895 904 CDD DLC-like_DYNLL1_DYNLL2 1 77 - -
Cec11g1895 904 MobiDBLite consensus disorder prediction 654 669 - -
Cec11g1895 904 Pfam Mre11 DNA-binding presumed domain 402 554 IPR007281 GO:0004519(InterPro)|GO:0005634(InterPro)|GO:0006302(InterPro)|GO:0030145(InterPro)
Cec11g1895 904 Gene3D - 116 412 IPR029052 -
Cec11g1895 904 SMART Mre11_DNA_bind_2 401 554 IPR007281 GO:0004519(InterPro)|GO:0005634(InterPro)|GO:0006302(InterPro)|GO:0030145(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1895 K10865 - - csv:101217141 1286.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g0299 Cec-Chr11:3225471 Cec11g1895 Cec-Chr11:33173055 6.90E-15 dispersed
Cec11g1895 Cec-Chr11:33173055 Cec06g0945 Cec-Chr6:12933377 1.80E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g302 . . Bda07g00271 . . . . . . . . . . . . Cpe06g00720 . . . . . . . . Cla11g01806 Cam11g1872 Cec11g1895 Cco11g1903 Clacu11g2036 Cmu11g1841 . Cone6ag0111 . Cone14ag1090 . Lsi04g01278 . . . . . . . Bpe11g00506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .