Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1898 ATGACCGACGCCATGGACTTGCTTCGATCTAATCTCTCCCGCGTTCGCATTCCGGAGCCTACCAATCGCATCTACAAGCAGGAATGCTGCTTGTCCTTCGACACTCCGAGGTCAGAAGGTGGTTTGTTCATTGATTTGAATACATTTCTAGCATTTGGAAAGGATTTTGTAGGTTGGAACTATGAGAGGACTGGAAATCCTGTGTATTTACACATAAAGCAAAGAAAGAAGTTGGTTCCTGAAGACAGGCCTTCAAAGAAACCCACTCTCTTAGCTATAGGAGTTGATGGTGGGTTTGATAACAATGAACCCGAATATGATGAAACTTATAATATAGTGATACTGCCTAATTATGCAACTCTTCCATTTCCTTCGGTGGAGCTGCCAGAGAAGGTAAGGTTGGCAGTTGATGCTGTCTTATTGGCTGAGGGCGCTGAGAGAAAAGAGCAACTTGCAGCATGGACAGCTGATAAGAAGCAGATTAGTTCATATGCAATGAATCTGCAGCAGATTGACAATGGTGTTATAGTTCCTCCTTCTGGATGGAAGTGTTCTAAATGTGATAAAAGTGAGAATCTGTGGCTCAATTTAACTGACGGAATGATCCTTTGTGGGAGAAGAAATTGGGATGGAACAGGAGGTAACAACCATGCTGTTGAGCACTACAAAGAGACAGGCTATCCTCTTGCTGTTAAACTAGGAACGATCACAGCTGACCTTGAAGCAGCAGATGTTTACTCTTATCCAGAGGATGATAGTGTCTTGGACCCAATTCTAGGACAACATCTTGCTTTCTTTGGCATTGACTTTTCATCCTTACAGAAGACTGAAATGACCACTGCTGAAAGAGAGCTTGACCAAAACACTAATTTTGATTGGAATCGGATACAAGAAAGTGGACAGGAAGTTGAACCAGTTTTTGGGCCAGGTTACACTGGGCTTGTTAATCTAGGAAACAGCTGCTACTTGGCGGCGACAATGCAAGTTGTATTTTCAACGCATCTGTTTTGTGAAAGATACTACACGAAACAAAGTTTAAAATCGGCTTTTGAAACTGCACCTGCAGATCCAACTGTCGATCTTAACATGCAGCTAACAAAGCTGGCACATGGTTTGCTATCCGGAAAATATTCAATTCCTTCACCAGAGAAATTTGAAAAGTTGAATTCTTCTTCCTCGGCAATAAATGCAAAACAAGAAGGCATACCCCCTCGAATGTTCAAAGCAGTTATTGCCGCGAGCCATCCTGAATTTTCTACAATGAGACAGCAGGATGCCTTGGAATTCTTCCTGCATTTTCTTGATCAAGTTGAGCGACAGAATTCTGGGAGTTCTGGAAGTGATCCTGCAAGAAGCTTCAAATTTGGTATTGAGGATCGTATTGTGTGTTCCTCTGGAAAAGTTGCTTATAACAGACGGCATGATTATATTCTCTCATTGAACATCCCATTACATGAAGCTACTAATAAAGATGAAGTTGAAGCCTTCCAGAAGCTCAAGGCACAAAAGATTTCAGAAGGGAAGGAACTAGGCACTGATGAAATTGTCCGGCCTAGAGTACCTCTAGAGGCATGCCTTGCAAGCTTTTCATCTCCTGAGGAGATTCATGATTTTTACAGCACTGCGTTGCAAACTAAGACTACAGCAACAAAGACAGCAAGATTAACTTCCTTCCCAGACTACCTGGTCTTGCATATGCGCAAATTTATTATGGGGGAGGGCTGGGTGCCCAAAAAACTAGATGTCTATATTGATGTCCCTGACATCATTGATCTTAGTCACTTGCGTAGTAAAGGACCTCAGGCTGGGGAAGAGCTTTTGCCCGAGGCTG 1831 42.76 MTDAMDLLRSNLSRVRIPEPTNRIYKQECCLSFDTPRSEGGLFIDLNTFLAFGKDFVGWNYERTGNPVYLHIKQRKKLVPEDRPSKKPTLLAIGVDGGFDNNEPEYDETYNIVILPNYATLPFPSVELPEKVRLAVDAVLLAEGAERKEQLAAWTADKKQISSYAMNLQQIDNGVIVPPSGWKCSKCDKSENLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITADLEAADVYSYPEDDSVLDPILGQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPVFGPGYTGLVNLGNSCYLAATMQVVFSTHLFCERYYTKQSLKSAFETAPADPTVDLNMQLTKLAHGLLSGKYSIPSPEKFEKLNSSSSAINAKQEGIPPRMFKAVIAASHPEFSTMRQQDALEFFLHFLDQVERQNSGSSGSDPARSFKFGIEDRIVCSSGKVAYNRRHDYILSLNIPLHEATNKDEVEAFQKLKAQKISEGKELGTDEIVRPRVPLEACLASFSSPEEIHDFYSTALQTKTTATKTARLTSFPDYLVLHMRKFIMGEGWVPKKLDVYIDVPDIIDLSHLRSKGPQAGEELLPEA 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33210277 33221428 - CePI673135_11g018980.1 Cec11g1898 217110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1898 610 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 257 IPR001607 GO:0008270(InterPro)
Cec11g1898 610 CDD Peptidase_C19B 313 591 - -
Cec11g1898 610 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 610 IPR028889 -
Cec11g1898 610 FunFam Ubiquitin carboxyl-terminal hydrolase 5 102 - -
Cec11g1898 610 SUPERFAMILY RING/U-box 162 270 - -
Cec11g1898 610 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843(InterPro)
Cec11g1898 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 257 IPR013083 -
Cec11g1898 610 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270(InterPro)
Cec11g1898 610 SUPERFAMILY Cysteine proteinases 307 607 IPR038765 -
Cec11g1898 610 FunFam Ubiquitin carboxyl-terminal hydrolase 148 257 - -
Cec11g1898 610 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270(InterPro)
Cec11g1898 610 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Cec11g1898 610 Gene3D Cysteine proteinases 305 609 - -
Cec11g1898 610 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 180 596 IPR050185 -
Cec11g1898 610 FunFam Ubiquitin carboxyl-terminal hydrolase 305 610 - -
Cec11g1898 610 Pfam Ubiquitin carboxyl-terminal hydrolase 312 602 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cec11g1898 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 106 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1898 K11836 - - csv:101210128 1188.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g317 . . . . . . . . . . . . . . . . Cpe02g00728 . . . . . . . Cla11g01809 Cam11g1875 Cec11g1898 Cco11g1906 Clacu11g2039 Cmu11g1844 Cre11g2249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .