Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1912 ATGCCACGTGTCAGTCATCAATCTAAGCGCCCTCAGTGGGCATCTCACTGTTTGGAATTTGGATTTCTATTCCCTCTTTTCTTAATTTCCCCATCTTTTCTTTTACCTTCTTTGCTTCTAAAAAACTACGACCACCGACCCACTTCCAGACTGCGAGAAGAGTGGGGGCGGACAGAAGCGGCGGCGTACGGCGGAGAGAGGACAGGGAGAGAGATCGCTCCGGCTACTGATGGATGTTTTTCGAAGTTGTCTCTCTCTCGCTTGTTTAGTGGAAGCACCGGCTGGCACTCATTAGCAACTGTAACCTGTTTGATCAAAAGTCTTAAAGGAACTTTGAGAGTTCTTGATTTTAGAAGGTTGGTTTTTGCGATTCACGATCTGGGTATTGCGCTTCTTGACGGATTCTTCTCTCATTCTTTTGAAGTGAAGGAAATGGTTCGATCGGATGAGAATAACCCCGGAGTGATCGGACGGGCAAATCTTCATGGGAGTATACGAATTGGTGGTTGTGGCGGTGGCAAATTTGTGGTGGGGATGGGTCAAAACCGCACAGCTTTGAGCAGCATTAATGAAAATGTTGCAGCAGCTCCTCCTGCCCCTCATCCCTGTGCAGTCCTCAAAAGAGGCCTAACAGAAACTGATGTTGTTGTCAACAATAAAGACCCACCGATTCCAATTCATCGACCTATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCAGCAGCCACCTGTGCCTGAGGTTGATAAAAAGCCACTTGAATCTGCTCCAACTCGAAAAGAGTCTTCAGATCATCATCCCATTGTTGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGATATAGACAGCCGTGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTTCTACAGGAAATCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAACAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACATTGTACCTAACAGTCAACCTGATTGATAGATTCTTAGCGGTTCAGTCAGTGGTGAGAAAGAAGCTTCAGCTTGTTGGAGTGACGGCCATGCTTATAGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGATAAAGCCTACACCCGAAAAGAAGTTCTGGACATGGAGAAGTTGATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTGCTCTCCTTCTTCATGGTGGAGCTGTGTCTAGTGGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACAGTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGCTACTCACAGGAACAACTTCTGGAATGTTCAAGGCTGATGGTGGGGTTCCATCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGTACATCCAAGTTTGGATATGCTGCTAGAAATTCTGGGTCCAGTTGGGTTCTTCTAGCAATTTCTGGATATCCTGTGATAGAGATATTTGAATAG 1782 45.12 MPRVSHQSKRPQWASHCLEFGFLFPLFLISPSFLLPSLLLKNYDHRPTSRLREEWGRTEAAAYGGERTGREIAPATDGCFSKLSLSRLFSGSTGWHSLATVTCLIKSLKGTLRVLDFRRLVFAIHDLGIALLDGFFSHSFEVKEMVRSDENNPGVIGRANLHGSIRIGGCGGGKFVVGMGQNRTALSSINENVAAAPPAPHPCAVLKRGLTETDVVVNNKDPPIPIHRPITRKFAAQLANKQQPPVPEVDKKPLESAPTRKESSDHHPIVEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKKDQLAVVEYIDDLYAFYRKSEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTVNGFKEWSKTSEWHTGYSQEQLLECSRLMVGFHQKAGTGKLTGVHRKYCTSKFGYAARNSGSSWVLLAISGYPVIEIFE 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33326601 33334942 - CePI673135_11g019120.1 Cec11g1912 217124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1912 593 FunFam G2/mitotic-specific cyclin-1 436 571 - -
Cec11g1912 593 PANTHER CYCLINS 307 563 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cec11g1912 593 CDD CYCLIN_AtCycB-like_rpt1 310 454 - -
Cec11g1912 593 SMART Cyclin_C_2 459 576 IPR004367 -
Cec11g1912 593 MobiDBLite consensus disorder prediction 253 274 - -
Cec11g1912 593 Pfam Cyclin, C-terminal domain 459 571 IPR004367 -
Cec11g1912 593 CDD CYCLIN_AtCycB-like_rpt2 459 572 - -
Cec11g1912 593 SMART cyclin_7 463 545 IPR013763 -
Cec11g1912 593 SMART cyclin_7 366 450 IPR013763 -
Cec11g1912 593 SUPERFAMILY Cyclin-like 458 572 IPR036915 -
Cec11g1912 593 ProSitePatterns Cyclins signature. 361 392 IPR048258 -
Cec11g1912 593 SUPERFAMILY Cyclin-like 321 456 IPR036915 -
Cec11g1912 593 MobiDBLite consensus disorder prediction 238 274 - -
Cec11g1912 593 Pfam Cyclin, N-terminal domain 331 457 IPR006671 -
Cec11g1912 593 Gene3D - 345 457 - -
Cec11g1912 593 Gene3D - 331 570 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1912 K21777 - - csv:101223199 757.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0653 Cec-Chr4:25420608 Cec11g1912 Cec-Chr11:33326601 1.70E-67 dispersed
Cec04g1797 Cec-Chr4:36778671 Cec11g1912 Cec-Chr11:33326601 3.00E-130 dispersed
Cec09g0240 Cec-Chr9:2086511 Cec11g1912 Cec-Chr11:33326601 7.20E-45 dispersed
Cec09g2384 Cec-Chr9:40616623 Cec11g1912 Cec-Chr11:33326601 5.10E-48 dispersed
Cec11g1912 Cec-Chr11:33326601 Cec05g1888 Cec-Chr5:30937193 5.60E-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2384 . 53 340 Core Cell Cycle Gene Families AT3G48750 85.8 4.7e-148 520.8
Cec04g0733 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 1.6e-95 346.3
Cec11g1943 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.3e-93 338.6
Cec04g0733 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 7.9e-154 540.0
Cec11g1943 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.2e-118 420.2
Cec05g2384 . 53 336 Core Cell Cycle Gene Families AT3G54180 53.5 1.4e-89 326.6
Cec04g0733 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 4.5e-123 437.6
Cec11g1943 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.8e-93 338.6
Cec11g1943 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Cec04g0733 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.7 2.4e-118 422.2
Cec05g2384 . 53 336 Core Cell Cycle Gene Families AT1G76540 53.8 1.5e-91 333.2
Cec11g1943 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.4e-160 560.8
Cec04g0733 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.4e-120 428.3
Cec05g2384 . 53 336 Core Cell Cycle Gene Families AT1G20930 55.5 1.9e-94 342.8
Cec02g2538 . 79 593 Core Cell Cycle Gene Families AT5G10270 75.3 8.8e-219 756.5
Cec10g1422 . 23 484 Core Cell Cycle Gene Families AT5G10270 77.3 1.7e-209 725.7
Cec03g1707 . 840 1158 Core Cell Cycle Gene Families AT5G10270 51.6 1.0e-97 354.4
Cec05g0684 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 2.2e-97 353.2
Cec05g1107 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.2e-97 353.2
Cec08g0186 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.0 8.5e-97 351.3
Cec11g0067 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 5.5e-96 348.6
Cec02g1848 . 172 488 Core Cell Cycle Gene Families AT5G10270 52.6 2.1e-95 346.7
Cec03g0381 . 93 409 Core Cell Cycle Gene Families AT5G10270 52.6 8.0e-95 344.7
Cec02g1707 . 101 419 Core Cell Cycle Gene Families AT5G10270 50.7 2.6e-93 339.7
Cec02g1847 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.3 5.4e-91 332.0
Cec02g2538 . 143 592 Core Cell Cycle Gene Families AT5G64960 72.9 8.1e-179 623.6
Cec10g1422 . 87 537 Core Cell Cycle Gene Families AT5G64960 71.2 2.5e-172 602.1
Cec02g1848 . 226 488 Core Cell Cycle Gene Families AT5G64960 53.6 7.1e-82 301.6
Cec05g1107 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Cec03g1707 . 894 1158 Core Cell Cycle Gene Families AT5G64960 50.7 7.8e-81 298.1
Cec11g0067 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.3e-80 297.4
Cec05g0684 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 2.3e-80 296.6
Cec08g0186 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 5.1e-80 295.4
Cec02g1847 . 182 444 Core Cell Cycle Gene Families AT5G64960 52.9 1.1e-79 294.3
Cec03g0381 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.2 3.3e-79 292.7
Cec06g1651 . 4 414 Core Cell Cycle Gene Families AT1G73690 73.7 1.4e-171 599.4
Cec06g1651 . 12 348 Core Cell Cycle Gene Families AT1G66750 77.2 5.6e-156 547.4
Cec05g2384 . 56 333 Core Cell Cycle Gene Families AT1G66750 50.4 2.8e-75 279.3
Cec06g1651 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.2 1.9e-173 605.5
Cec04g0193 . 32 484 Core Cell Cycle Gene Families AT5G63610 78.0 4.1e-202 701.0
Cec11g0246 . 1 482 Core Cell Cycle Gene Families AT4G28980 62.9 1.5e-175 612.8
Cec08g0619 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.6 1.7e-144 509.6
Cec09g0240 . 347 625 Core Cell Cycle Gene Families AT1G44110 54.8 5.1e-88 322.0
Cec05g1888 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.1 5.8e-84 308.5
Cec05g2257 . 124 403 Core Cell Cycle Gene Families AT1G44110 52.5 1.9e-82 303.5
Cec08g1681 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 2.1e-78 290.0
Cec08g1329 . 334 595 Core Cell Cycle Gene Families AT1G44110 53.4 2.9e-75 279.6
Cec09g0240 . 346 621 Core Cell Cycle Gene Families AT1G77390 51.4 1.1e-76 284.3
Cec05g1888 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.1 1.1e-74 277.7
Cec05g2257 . 129 401 Core Cell Cycle Gene Families AT1G77390 50.2 7.5e-73 271.6
Cec08g1329 . 334 591 Core Cell Cycle Gene Families AT1G77390 50.8 1.2e-67 254.2
Cec05g1888 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.0 5.9e-118 421.4
Cec08g1329 . 167 607 Core Cell Cycle Gene Families AT5G25380 51.7 3.1e-103 372.5
Cec09g0240 . 345 625 Core Cell Cycle Gene Families AT5G25380 63.0 1.0e-98 357.5
Cec08g0619 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 9.8e-81 297.7
Cec05g2257 . 128 396 Core Cell Cycle Gene Families AT5G25380 51.7 1.4e-74 277.3
Cec02g0707 . 119 343 Core Cell Cycle Gene Families AT5G25380 51.8 8.1e-59 224.9
Cec05g1888 . 44 422 Core Cell Cycle Gene Families AT5G11300 53.6 6.5e-95 344.7
Cec08g1329 . 330 545 Core Cell Cycle Gene Families AT5G11300 70.4 6.6e-79 291.6
Cec08g0619 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 4.0e-68 255.8
Cec05g2257 . 124 340 Core Cell Cycle Gene Families AT5G11300 55.3 2.1e-61 233.4
Cec08g1681 . 92 307 Core Cell Cycle Gene Families AT5G11300 51.9 6.8e-60 228.4
Cec02g0707 . 119 285 Core Cell Cycle Gene Families AT5G11300 51.8 2.2e-42 170.2
Cec09g0240 . 311 625 Core Cell Cycle Gene Families AT1G15570 64.7 2.3e-117 419.5
Cec08g0619 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.4 2.6e-81 299.7
Cec02g0707 . 119 347 Core Cell Cycle Gene Families AT1G15570 50.9 7.0e-58 221.9
Cec09g0240 . 126 625 Core Cell Cycle Gene Families AT1G80370 51.2 2.8e-118 422.5
Cec08g0619 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 3.5e-81 299.3
Cec05g2257 . 124 401 Core Cell Cycle Gene Families AT1G80370 51.4 9.0e-77 284.6
Cec08g1681 . 92 370 Core Cell Cycle Gene Families AT1G80370 51.6 4.9e-75 278.9
Cec02g0707 . 119 348 Core Cell Cycle Gene Families AT1G80370 51.5 2.7e-57 219.9
Cec08g1681 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.3 1.8e-114 409.5
Cec05g2257 . 30 406 Core Cell Cycle Gene Families AT5G43080 57.0 1.0e-112 403.7
Cec05g1888 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.7 5.6e-79 291.6
Cec08g0619 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 5.6e-79 291.6
Cec09g0240 . 348 625 Core Cell Cycle Gene Families AT5G43080 51.3 2.2e-75 279.6
Cec08g1681 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.1 1.3e-123 439.9
Cec05g2257 . 30 406 Core Cell Cycle Gene Families AT1G47210 54.2 4.8e-113 404.8
Cec05g1888 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.2e-76 283.9
Cec09g0240 . 348 620 Core Cell Cycle Gene Families AT1G47210 51.1 1.4e-75 280.4
Cec08g1329 . 331 597 Core Cell Cycle Gene Families AT1G47210 50.2 6.6e-70 261.5
Cec05g2257 . 124 404 Core Cell Cycle Gene Families AT1G47220 58.7 5.7e-94 341.3
Cec08g1681 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.6 1.4e-92 336.7
Cec05g2257 . 30 406 Core Cell Cycle Gene Families AT1G47230 57.4 4.2e-117 418.3
Cec08g1681 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.1 1.1e-114 410.2
Cec02g0707 . 66 351 Core Cell Cycle Gene Families AT1G47230 53.5 4.2e-77 285.4
Cec08g0619 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 2.7e-76 282.7
Cec09g0240 . 350 620 Core Cell Cycle Gene Families AT1G47230 51.6 1.1e-72 270.8
Cec05g1888 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.4e-72 269.6
Cec04g0653 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 3.5e-115 412.1
Cec04g0653 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.8 2.0e-81 299.7
Cec02g2373 . 822 1020 Core Cell Cycle Gene Families AT5G06150 63.8 4.9e-64 241.9
Cec04g1797 . 170 344 Core Cell Cycle Gene Families AT5G06150 53.1 2.5e-44 176.4
Cec04g0653 . 1 406 Core Cell Cycle Gene Families AT3G11520 57.2 2.5e-104 375.9
Cec04g1797 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.0 4.4e-61 232.3
Cec02g2373 . 730 1127 Core Cell Cycle Gene Families AT2G26760 52.5 3.7e-108 388.7
Cec04g1797 . 8 440 Core Cell Cycle Gene Families AT2G17620 59.5 8.8e-127 450.7
Cec11g1912 . 181 580 Core Cell Cycle Gene Families AT2G17620 52.2 1.9e-105 379.8
Cec04g1797 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.2 3.0e-102 369.0
Cec11g1912 . 174 537 Core Cell Cycle Gene Families AT4G35620 53.4 7.6e-90 327.8
Cec02g2373 . 853 1079 Core Cell Cycle Gene Families AT4G35620 50.9 4.0e-54 209.1
Cec11g1912 . 145 580 Core Cell Cycle Gene Families AT1G20610 63.3 2.3e-143 505.8
Cec04g1797 . 1 440 Core Cell Cycle Gene Families AT1G20610 56.6 1.5e-121 433.3
Cec11g1912 . 148 477 Core Cell Cycle Gene Families AT1G76310 63.8 8.3e-104 374.0
Cec04g1797 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.2 5.8e-81 298.1
Cec02g2373 . 849 1016 Core Cell Cycle Gene Families AT1G76310 52.4 5.8e-41 165.2
Cec09g2170 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.6 3.1e-111 398.7
Cec05g2734 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 7.5e-105 377.5
Cec04g1542 . 41 335 Core Cell Cycle Gene Families AT2G22490 55.3 1.3e-83 307.0
Cec05g1197 . 14 335 Core Cell Cycle Gene Families AT4G34160 50.8 2.1e-79 293.1
Cec02g0664 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 4.3e-61 232.3
Cec05g2245 . 388 635 Core Cell Cycle Gene Families AT5G67260 51.4 9.0e-65 244.6
Cec04g1542 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.8e-69 259.6
Cec08g1180 . 131 328 Core Cell Cycle Gene Families AT5G65420 56.5 4.1e-61 231.9
Cec04g1542 . 54 233 Core Cell Cycle Gene Families AT5G10440 58.6 2.1e-55 212.6
Cec08g1180 . 126 304 Core Cell Cycle Gene Families AT5G10440 53.9 4.5e-50 194.9
Cec04g1340 . 149 417 Core Cell Cycle Gene Families AT5G27620 63.6 6.4e-92 334.3
Cec01g1390 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.2e-44 172.9
Cec02g2278 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.0e-42 169.1
Cec01g1390 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.3e-39 158.7
Cec02g2278 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.9e-39 157.1
Cec05g2932 . 300 1319 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1417.5
Cec09g0589 . 2 486 Core Cell Cycle Gene Families AT1G02970 59.9 5.4e-160 561.2