Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1930 ATGCTGTGGGTTGCGGCTAAGATAGAAAGTGATTCTCCTCTGCTTTACGGCGATCCCGTTTCGCCTCATCCCGAGAGGCCGAGTCCGAGGCGGAAGGGCCCACCTGTGGAGTATCGACGAGCGACTGTAGATGCTGTCACTGTTGCTGCACAAAGATTGGGCCTCCAAAATAATACTTACCTTCCGGGATCAGTTAGGTTTGTAACTGTTGCCGTGGCCTTGGTCATGTTTAAGACCATCTCCTGGCCGGCGGCGGAAGAAAGGAAGAAACAGAAGAACATTTCATCAAGACCATCGGTTGTGAACATTGGAGCTATTTTATCTTTTAATTCTACCATTGGAAAAGTTGCTACGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCCAGCATTCTTCCTGGAACCGAACTTTGGCTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTCCCTCTGGTATCATTTTCGGCTACTGATCCTACTCTCTCTGCCCTTCAGTTTCCTTTTTTTGTGAGGGCTGCGCAGAGTGATTTGTTTCAGATGACTGCAGTTGCTGAGATTGTTGAGTATTATAGTTGGAAAGAGGTCATTGCTATATATGTCGATGATGATTATGGGTGGAATGGAGTTGCGACATTGGGCGATAAACTTGCTGAAAGGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGATAATCGAGCCCGAGTTATGGATCAACTTGTTAAAGTTGCACTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCTGGATTAGGCGCCTTAGTCTTTTCAGTGGCTAAGTACCTCCAAATGATAGGCAATGGATATGTATGGATAGCAACTGATTGGCTTTCGTCTCTATTAGACAGTGTCGTTCCTCTTCCTCTTGAGATCATGGAGTCGATGCAAGGAGTTCTTTCTCTACGCCAGCACACAGCAGAATCAGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACAGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCGACAAATTTTTCAATCAAGGTGGGGTCATCACACACTCTAATGACTCCAAGCTGCATTTCAGTGAAAGTGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCGCCTGCTGAATAACATATTGGAGAGCGATTTTGTTGGTCTGACTGGTGCCATTAAGTTTGATTTGGACAGATCCCTTCTTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTGGGTTACTGGTCCAACTATTCTGGTTTATCAATTGATGTTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTATGAGGTGATATGGCCAGGAAATACAATAGAAAAGCCTCGAGGATGGGTATTTCCGAACAATGGGAAGCTATTAAAAATTGGAGTGCCACTTCGGGTCAGTTATAAGGAGTTTGTATCAAAAATCAAAGGGACGGAAAATTTCCAGGGTTTCTGCATCGATGTGTTTACAGCTGCTGTAAACTTATTGCCGTATGCTGTCCCCCACCAATTTATAGCCTTTGGTGATGGCCATCACAATCCAAATTACACAGATCTTGTGTACGGGATTACAACTGGCAAATTTGATGCTGTTGTCGGAGACATAGCCATTGTCACAAGCCGGACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACAGCTAGTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAAAACACAATTAGCACTCTTGGCCGTCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATAGTAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGGAAGGTGGTGAACCGATAGGTTTCCAAGTTGGATCATTTGCTGAACGTTATCTGAGCGAGGAGCTGAACATATCTAGATCCAGGCTTGTTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTTCTATATGTAGAAAGTTTCCTCTCGAGACAATGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGATTCTCCCTTGGCCATAGACTTGTCAACGGCCATTTTGCAGCTCTCGGAGAATGGTGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCACCATGGACAATGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTATTTCTAATCTGTGGGATAGTTTGTTTCATTGCCCTTGCCATATATTGCTTTCAGATTATTCGTCAGCTATACCGTGCCGATGCACAAGAATCTGATCTGTCTAGCAGTAGTGGATCACATTCTAACCGCTTTCGAAGAATTATATCGATATTGGATGAGAAGAAAGAACCGTCTAAAAGGGGAAGCAAAAGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGGACGATGATAATTTGGAGGCTGATCGTTGA 2964 43.86 MLWVAAKIESDSPLLYGDPVSPHPERPSPRRKGPPVEYRRATVDAVTVAAQRLGLQNNTYLPGSVRFVTVAVALVMFKTISWPAAEERKKQKNISSRPSVVNIGAILSFNSTIGKVATIAIEEAVKDVNADPSILPGTELWLQMQNSNCSGFLGMVEVLQLMENETVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEYYSWKEVIAIYVDDDYGWNGVATLGDKLAERRCKITYKVGISPDSVDNRARVMDQLVKVALMESRVMVLHVNPGLGALVFSVAKYLQMIGNGYVWIATDWLSSLLDSVVPLPLEIMESMQGVLSLRQHTAESDKKRAFLSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVITHSNDSKLHFSESGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDLDRSLLHPAYDIINVIGTGSRRVGYWSNYSGLSIDVPETLYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVNLLPYAVPHQFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLREGGEPIGFQVGSFAERYLSEELNISRSRLVPLGSPEEYAKALELGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACTMDNAELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYRADAQESDLSSSSGSHSNRFRRIISILDEKKEPSKRGSKRRKVEKSSENDKDDDNLEADR 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33463121 33472305 + CePI673135_11g019300.1 Cec11g1930 217142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1930 987 CDD PBP1_GABAb_receptor_plant 102 491 IPR044440 -
Cec11g1930 987 Gene3D - 119 465 - -
Cec11g1930 987 CDD GluR_Plant 535 878 - -
Cec11g1930 987 Gene3D - 528 646 - -
Cec11g1930 987 FunFam Glutamate receptor 532 648 - -
Cec11g1930 987 Gene3D - 216 490 - -
Cec11g1930 987 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 101 956 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cec11g1930 987 Pfam Receptor family ligand binding region 119 475 IPR001828 -
Cec11g1930 987 MobiDBLite consensus disorder prediction 15 37 - -
Cec11g1930 987 Gene3D - 647 775 - -
Cec11g1930 987 MobiDBLite consensus disorder prediction 952 980 - -
Cec11g1930 987 FunFam Glutamate receptor 648 778 - -
Cec11g1930 987 Pfam Ligand-gated ion channel 879 910 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec11g1930 987 SUPERFAMILY Periplasmic binding protein-like II 515 880 - -
Cec11g1930 987 SMART GluR_14 538 880 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec11g1930 987 FunFam Glutamate receptor 216 370 - -
Cec11g1930 987 MobiDBLite consensus disorder prediction 952 987 - -
Cec11g1930 987 Gene3D - 844 877 - -
Cec11g1930 987 SUPERFAMILY Periplasmic binding protein-like I 96 529 IPR028082 -
Cec11g1930 987 PIRSF IGluLR_plant 66 987 IPR017103 -
Cec11g1930 987 FunFam Glutamate receptor 774 882 - -
Cec11g1930 987 Gene3D - 807 843 - -
Cec11g1930 987 Pfam Bacterial extracellular solute-binding proteins, family 3 555 657 IPR001638 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0350 Cec-Chr2:3236449 Cec11g1930 Cec-Chr11:33463121 1.50E-277 dispersed
Cec02g0894 Cec-Chr2:11314900 Cec11g1930 Cec-Chr11:33463121 4.80E-287 dispersed
Cec02g0898 Cec-Chr2:11363148 Cec11g1930 Cec-Chr11:33463121 6.90E-286 dispersed
Cec02g0919 Cec-Chr2:12031095 Cec11g1930 Cec-Chr11:33463121 1.30E-261 dispersed
Cec04g1806 Cec-Chr4:36826041 Cec11g1930 Cec-Chr11:33463121 0.00E+00 dispersed
Cec08g1508 Cec-Chr8:26808541 Cec11g1930 Cec-Chr11:33463121 4.80E-106 dispersed
Cec11g1817 Cec-Chr11:32359830 Cec11g1930 Cec-Chr11:33463121 3.60E-103 dispersed
Cec11g1930 Cec-Chr11:33463121 Cec08g0999 Cec-Chr8:21821347 1.80E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1930 K05387 - csv:101204862 1678.69