Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec11g1933 | ATGGCAGTGTCCGTACCGAAGACCTTGGATTCTTGTCCCATTCATCGCCTTCTTCCTCACATTCGTTCACAATCCTCGCCCAACCAAACAGAGAATGCGAGGCAACAAGTGTTTTCTCTACCAATTTCAAGAAGGTCTGCAATTTTGATCTCTTCGCTACCTTTCACTCTCGTTTCTGTATCTCCGTCCAAGGCAAGAGAGAGAAGGAACAAGAAGACCATTCCTCTCGAGGATTATCTCACCAGCCCAAATGGACTGAAGTACTATGATATCGAGGAGGGAAAGGGTCCTGTGGCAGAGAAGGGTTCCACAGTTCAGGTGCACTTTGATTGCCTCTATAGAGGAATTACAGCTGTGTCAAGTCGAGAATCTAAACTCTTGGCTGGAAATCGTATTATCGCCCAGCCTTATGAGTTCAAAGTAGGGGCCGTTCCCGGGAAGGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTCTGTTTTCAGCACAGGCTGCACCTAAACCCCCACCAGCAATGTACTCCATAACTGAAGGGATGAAAGTTGGGGGAAAGCGAACAGTGATTGTTCCCCCTGAGGCTGGATATGGTCAAAAGGGAATGAATGAGATCCCACCTGGAGCTACTTTTGAATTGAACATCGAGCTTTTAGAAGTGGTGCAGCCTGAAAAAGAACGAGGAGAAGTACAACAGTCTAGTCTTGACTCGTGGTCTTGGGTATTGAGGTTTGAGAGTGTGTTTTTGGGTGAAAATGAGTCAAAGTCCTTTCTCATCATACAAATACAAGAGCTTGAGGAGCAAGGTACCTCGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCATCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGCCGTTCTGGTAGTTCTGTTTGTGTTGTGAATATTGACTTCAAACCTGTCGTCGATCTTCAGCCGAGATGGCATAACTTTACAGTACAGGCGATGAATTCAAAAAGGGGAACAGTATCAGCATCATGTGGATGGTGGACATTGCAACTGCCAATGTGA | 1329 | 48.53 | MAVSVPKTLDSCPIHRLLPHIRSQSSPNQTENARQQVFSLPISRRSAILISSLPFTLVSVSPSKARERRNKKTIPLEDYLTSPNGLKYYDIEEGKGPVAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRIIAQPYEFKVGAVPGKERKRDFVDNPNGLFSAQAAPKPPPAMYSITEGMKVGGKRTVIVPPEAGYGQKGMNEIPPGATFELNIELLEVVQPEKERGEVQQSSLDSWSWVLRFESVFLGENESKSFLIIQIQELEEQGTSPASTPPPSPTRLSPRGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNSRSGSSVCVVNIDFKPVVDLQPRWHNFTVQAMNSKRGTVSASCGWWTLQLPM | 442 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 33481667 | 33487233 | + | CePI673135_11g019330.1 | Cec11g1933 | 217145 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec11g1933 | 442 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 99 | 217 | IPR001179 | GO:0003755(InterPro) | |
| Cec11g1933 | 442 | ProSiteProfiles | Zinc finger RING-type profile. | 311 | 353 | IPR001841 | - | |
| Cec11g1933 | 442 | Pfam | Ring finger domain | 310 | 353 | IPR001841 | - | |
| Cec11g1933 | 442 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP18, CHLOROPLASTIC | 22 | 224 | IPR044180 | GO:0009543(PANTHER) | |
| Cec11g1933 | 442 | MobiDBLite | consensus disorder prediction | 368 | 394 | - | - | |
| Cec11g1933 | 442 | CDD | RING-H2_EL5-like | 310 | 353 | - | - | |
| Cec11g1933 | 442 | SUPERFAMILY | RING/U-box | 292 | 358 | - | - | |
| Cec11g1933 | 442 | FunFam | Peptidylprolyl isomerase | 62 | 225 | - | - | |
| Cec11g1933 | 442 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 102 | 220 | IPR001179 | GO:0003755(InterPro) | |
| Cec11g1933 | 442 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 357 | IPR013083 | - | |
| Cec11g1933 | 442 | SMART | ring_2 | 311 | 352 | IPR001841 | - | |
| Cec11g1933 | 442 | SUPERFAMILY | FKBP-like | 69 | 219 | - | - | |
| Cec11g1933 | 442 | Gene3D | - | 61 | 235 | IPR046357 | GO:0003755(InterPro) | |
| Cec11g1933 | 442 | MobiDBLite | consensus disorder prediction | 267 | 286 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec10g0013 | Cec-Chr10:212788 | Cec11g1933 | Cec-Chr11:33481667 | 6.10E-29 | dispersed | |
| Cec10g2274 | Cec-Chr10:36962258 | Cec11g1933 | Cec-Chr11:33481667 | 7.40E-18 | dispersed | |
| Cec11g1933 | Cec-Chr11:33481667 | Cec10g1972 | Cec-Chr10:34505944 | 7.10E-23 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec11g1933 | K01802 | - | csv:101206539 | 410.994 |