Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1942 ATGTCGGGATCTGAGACCGGAGTGATTTCCAGCGGCGAACCCTTCACCATCGGTCTCCACAAGAATTCAGTACAGTCACAACAGCCGGTCATGCAGGGCATGCATTTACCCTTCGGCGCCGATGGCGTCTACAAGCCCGTTGCCGCCGCCTCTCCCACCTACCAGTCCTCCGTCGTCGGAGTTACCGGTAATGCTGGTGCCGATGGATCTGCTCGTGAAGGTTTCGTCAACATGAATTCGCAAAGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTCGGAAGTATGGGCCAGATGGCAGTATGGCAATGGCTCCTGCAGTCCGCTCTCCCGCCGCAACTCAGTCCAGTGGAGGTTTTTCTCCTCCACCCACCGCCGCGCCTCCGTCGGGAGGATCAGCCACTCAAACTTCTTTGAAGAAAGCCAGAGGCAGACCCCCTGGTTCTTCTAGCAAAAAGCAGCAGTTGGATGGCTCGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATCCTTACAGCAAATGGAGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTACGAGGGGCGATTCGAGATTTTGTCGCTATCTGGGTCCTATCTCCTCTCCGAGAATGGCAGCCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGACCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCGTCTCCTGTACAGGTGGTCGTGGGGAGCTTTGTCACTGATGGGGTGCACAAGGAATTGAGACAAGTAAACCAAATAGAACAGTCCCCTGTTACTGCACCCCATAAACTTGCTCCGATCCGTGCTGGAATGACGGGAGCCAGCAGCCCGCCATCACGTGGGACTCTCAGTGAATCCTCAGGAGGGCCCGGGAGTCCGTTTAATCAGAGTGCTATAGCCTGCAATAATAACACCATATCTTGGAAGTGA 1056 53.5 MSGSETGVISSGEPFTIGLHKNSVQSQQPVMQGMHLPFGADGVYKPVAAASPTYQSSVVGVTGNAGADGSAREGFVNMNSQSEPVKRKRGRPRKYGPDGSMAMAPAVRSPAATQSSGGFSPPPTAAPPSGGSATQTSLKKARGRPPGSSSKKQQLDGSGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGSQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGVHKELRQVNQIEQSPVTAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAIACNNNTISWK 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33528232 33530860 - CePI673135_11g019420.1 Cec11g1942 217154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1942 351 ProSiteProfiles PPC domain profile profile. 161 302 IPR005175 -
Cec11g1942 351 FunFam AT-hook motif nuclear-localized protein 1-like 167 298 - -
Cec11g1942 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 289 - -
Cec11g1942 351 MobiDBLite consensus disorder prediction 68 165 - -
Cec11g1942 351 CDD DUF296 166 280 IPR005175 -
Cec11g1942 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 335 IPR039605 GO:0003680(InterPro)
Cec11g1942 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 281 IPR005175 -
Cec11g1942 351 Gene3D - 167 300 - -
Cec11g1942 351 SMART AT_hook_2 139 151 IPR017956 GO:0003677(InterPro)
Cec11g1942 351 SMART AT_hook_2 86 98 IPR017956 GO:0003677(InterPro)
Cec11g1942 351 MobiDBLite consensus disorder prediction 310 351 - -
Cec11g1942 351 MobiDBLite consensus disorder prediction 317 351 - -
Cec11g1942 351 MobiDBLite consensus disorder prediction 129 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0955 Cec-Chr8:21395096 Cec11g1942 Cec-Chr11:33528232 5.70E-91 dispersed
Cec09g1208 Cec-Chr9:12615860 Cec11g1942 Cec-Chr11:33528232 3.80E-38 dispersed
Cec10g0178 Cec-Chr10:1741462 Cec11g1942 Cec-Chr11:33528232 1.20E-46 dispersed
Cec11g0049 Cec-Chr11:632015 Cec11g1942 Cec-Chr11:33528232 3.80E-47 dispersed
Cec11g1942 Cec-Chr11:33528232 Cec06g0394 Cec-Chr6:4428535 2.00E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1942 - - - 0.0