Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1956 ATGAGGATGACTAGTAGAGGATGGTGGGGCCGTGGAGTCCGTACAAAGGGACCCGCACTGACTGATATTGTAGCTATCAGGAAGAACCAGAATCATTGTGGCCCCACCGCTTCTGTGCCATTATCTGTCTTCTGTACGACGTCGTTTATTGGTGCCCCTACCATTCCCTATTGCCTTAATGGACCTCGCTATTACTACAACTATGGACGTATGAAACAGCTGGCTGGGGCTGGGAGTGTTGGACTTGGAGTACCAATCTCTTTCAAAGGGTTGGGAAGCTATGAGGAAATACCCAGTTACAATCTCAGATCCAATTCCCAACTCAACCTACTCTCTTCATGCCCGATCTTCATTTCTTCCTTCCCCTCTCTTCTTCTTTTCATTTCCCCCGTCTCCTCACTTAGATTCACTTCCAATTCTCTCTTCACTTTTTTTCTCCCACCTTTCTCCTTCCTATGGATTAACTTTCTTCACCCCCCTTTCCTTTCTCATCCCTTCCCTTCCTCTTCCTCTTCCTCTTCCATGGACGACCTCGGTGCCCAAGTTGTTCCTCCTATTTTCATCCACCAACCCTTGACCAGTCGCTTCGCTGATCTGCCTTCCATCCCCAAGAAGCGTGCCTTATCGTATCAGGTCCCCAACTTCCATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCGCAAGATTCCTCACCAAACCCTCCAACCACTCCGATACTCTCTCATCCGAGCTCAAGAGGAAAGACGATTTCACTGCTGCTACTCCCTCCTCCATCCACAAGAAGACGGTCGACGTTCTGGATGACGAGGATGACAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTTGAGGAGCCAGTGTCTAAACCCCCCAAAAAGGTCCGCCCTGGATCTCCCGGCGCTGTCACCTACCCTATGTGCCAGGTCGATAATTGTAAGGAAGATCTATCCAATGCCAAAGACTATCACCGGAGACACAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCATCCTCTTTCGGAATTTGATGATGGGAAGAGGAGCTGTAGGAGGAGACTAGCGGGGCACAACTGGCGTAGAAGGAAGACACAGCCCGAGGATGTAACCTCAAGGCTGTCCCGGCCAGGAAGTAGAGGACCCCCAAGCACTGGGAATTTGGACATCGTCAGTTTATTGACTGTTCTAGCGAGGGCTCAAGGTAAAAACGAAGACCAGAGCGTGAAGAGCTTGTTGTCAGCAAATAGTGACCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCCGACCTTGCAGCGAAGTTGCCCAATTTAGATAATTTTAGGGGGAAGGCTCATCCACAAAGTTCTTTGCAGCACCAAAACAAATTAAATGGAAATCCATCTTCTCCTTCCACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCACATCAGCTCCAGATGCTCTTGCAATGCTGTCTCAGAAGAGCAGTGTCAGCAGTGATAGTGAAAAAACAAGGTCATCGTGCCCATCTGGTTCTGATCTCCAGAATAGGCCTATTGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCGGATGGACAGGTTCAAGGAACTCGAGTTGGTTTGCCACTTCAGTTGTTTGGCTCTTCGCCTGAACATGAAGCCCCACCGAACTTGGCTACTTCTAGAAAGTACTTCTCTTCTGATAGTAGTAATCCTATTGAAGAGAGGTCTCCGTCATCTTCACCTCCTCTCCTGCAAAAGTTGTTCCCAGTGCAAAGCACAGAAGAAACTACCAGTAATGGGAAAATACCAATCAGAAAAGAAGTTAGTGGCATTGAGGTTCGAAAGCCTCCCAGTAGCAATATTCCCTTTGAACTCTTCAGAGAGTCAGATAGAGCCAGACCAAATTCGTTTCGAACTGTTCCGTATCAAGCTGGATACACTTCTTCGGGTTCTGATCATTCACCTTCTAGTTTAAATTCTGATACTCAGGATCGCACTGGAAGGATAAGTTTTAAACTCTTTGACAAAGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCATCTGAAATGGAAAGCTACATACGGCCTGGTTGCGTGGTTCTGTCAGTTTATATGTCTATGTCATCCATTGCATGGGAACAGCTTGAAGAAAATTTGGATCTGCATGTTAAATCTTTGATTCATAGCGAAGAGCTTGATTTTTGGAGAAGTGGAAGATTTTTAGTTTATGCTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCGTCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAATCTCGGTGTCACCTTTGGCAGTTGTGGGTGGACAAAAGACCTCCTTTTTATTAAGGGGAAGGAATTTGAAAAATCCTGGCACCAGGATTCATTGCACGTCTATGGGAGGCTACGTATCTGAAGAAGTAATGGGATTAAGTAGGCAGGGAAAATACGATGAGATACATTCTGGAAGTTTCAAAGTTGGGGATGTATCACCTACTACTCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTTCGAGGAAACAGTTTCCCTGTTATCATAGCTGATGCTACCATCTGTTGGGAATTGAGACATCTTGAGTCCGATTTTGATGAGTTTAAAGTACCCGATATCAGTTCAGAAAGTCATTCATATGTTCCTTCGCAGCCAAGGCTAAGGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGGTTCTCTTACGAGCTAGATAATCCAGATTTTTTAATAAGGCGGTTCAGATTTTTACTCACATTCTCAGCGGAGAGGGACTTCTGTGCGTTGGTGAAAACACTTCTTGACATTTTGGCAAAAAAATGCTTGATCACAGATGGACTGTCAATGAAATCATTGGAGATGATATCTGAGATTCAGCTCTTAAGCCGGTCAGTGAAAAGGAGGTGCAGGCGGATGGTTGACTTACTTGTTCATTATCACGTATCTGGCTTTGGTGATGCAGAGAAAAAATACCTCTTTCCACCAAATTTTATTGGTCCTGGTGGTATTACGCCTCTGCATTTGGCAGCGTCCATGACAGATGCAGATGATTTGGTTGATGCACTAACAAATGACCCGCTGGAGATTGGGTTGGAGTGCTGGAGTTCCCAACTTGATGAAAACGGACAGTCGCCACGGGCTTATGCTTTAATGAGGGGTAATAATTCTTGTAATGAGCTGGTGGAGCGAAAACTTGGTGACAGAAAGAATGGTCAAGTTTCAGTAAGAATTAGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGATGCAGGGTGCAAAGTAGGTCCTGCTCCAGGTGTGCTGTTGTTGCAGCAAAGTGCAACAGGAGGGTTCCTGGGAGTGGTACACACAGGTTGCTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCCGTTTGCGTTTGCGTGTGCCTATTTTTGCGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGGCTATGGGACAATTTAG 3708 45.79 MRMTSRGWWGRGVRTKGPALTDIVAIRKNQNHCGPTASVPLSVFCTTSFIGAPTIPYCLNGPRYYYNYGRMKQLAGAGSVGLGVPISFKGLGSYEEIPSYNLRSNSQLNLLSSCPIFISSFPSLLLFISPVSSLRFTSNSLFTFFLPPFSFLWINFLHPPFLSHPFPSSSSSSSMDDLGAQVVPPIFIHQPLTSRFADLPSIPKKRALSYQVPNFHHQGQLHPHTWNPKAWDWDSARFLTKPSNHSDTLSSELKRKDDFTAATPSSIHKKTVDVLDDEDDSLRLNLGGGLNLNYVEEPVSKPPKKVRPGSPGAVTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLSRPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLAAKLPNLDNFRGKAHPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLATSAPDALAMLSQKSSVSSDSEKTRSSCPSGSDLQNRPIELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHEAPPNLATSRKYFSSDSSNPIEERSPSSSPPLLQKLFPVQSTEETTSNGKIPIRKEVSGIEVRKPPSSNIPFELFRESDRARPNSFRTVPYQAGYTSSGSDHSPSSLNSDTQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMSSIAWEQLEENLDLHVKSLIHSEELDFWRSGRFLVYAGRQLASHKDGKIRLNKSSKAWSNPELISVSPLAVVGGQKTSFLLRGRNLKNPGTRIHCTSMGGYVSEEVMGLSRQGKYDEIHSGSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICWELRHLESDFDEFKVPDISSESHSYVPSQPRLRDEILQFLNELGWLFQRERFSYELDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILAKKCLITDGLSMKSLEMISEIQLLSRSVKRRCRRMVDLLVHYHVSGFGDAEKKYLFPPNFIGPGGITPLHLAASMTDADDLVDALTNDPLEIGLECWSSQLDENGQSPRAYALMRGNNSCNELVERKLGDRKNGQVSVRIRNEIEQLEVSSGERCRVQSRSCSRCAVVAAKCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33619435 33628071 + CePI673135_11g019560.1 Cec11g1956 217168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1956 1235 MobiDBLite consensus disorder prediction 555 572 - -
Cec11g1956 1235 MobiDBLite consensus disorder prediction 600 625 - -
Cec11g1956 1235 MobiDBLite consensus disorder prediction 476 498 - -
Cec11g1956 1235 MobiDBLite consensus disorder prediction 473 498 - -
Cec11g1956 1235 Pfam SBP domain 319 392 IPR004333 GO:0003677(InterPro)
Cec11g1956 1235 MobiDBLite consensus disorder prediction 522 547 - -
Cec11g1956 1235 ProSiteProfiles Zinc finger SBP-type profile. 316 393 IPR004333 GO:0003677(InterPro)
Cec11g1956 1235 Gene3D - 310 380 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec11g1956 1235 MobiDBLite consensus disorder prediction 399 415 - -
Cec11g1956 1235 MobiDBLite consensus disorder prediction 385 415 - -
Cec11g1956 1235 MobiDBLite consensus disorder prediction 681 703 - -
Cec11g1956 1235 FunFam Squamosa promoter-binding-like protein 14 311 380 - -
Cec11g1956 1235 SUPERFAMILY SBT domain 317 397 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec11g1956 1235 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 231 1233 IPR044817 GO:0003677(InterPro)
Cec11g1956 1235 MobiDBLite consensus disorder prediction 522 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1956 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g1187 Cec-Chr10:25889467 Cec11g1956 Cec-Chr11:33619435 6.40E-120 dispersed
Cec10g1757 Cec-Chr10:32267735 Cec11g1956 Cec-Chr11:33619435 8.90E-30 dispersed
Cec11g1956 Cec-Chr11:33619435 Cec11g1839 Cec-Chr11:32572233 3.40E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30592 PF03110 SBP 4.30E-29 No_clan Cec TF