Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1957 ATGCTCCATCTTCTTCTTCTGCCATTCATTCTTTTAGCATCTTCTTCTGCGGCCGTTGACACCAAGCCCGGATGCCCTTCCAACTGTGGAAACGTCTCCGTTCCCTATCCTTTCGGCATCGGCGTTGGTTGTTACATGGCCACCGGGTTTGACATAACTTGCAATTCTTCGTATGATCCTCCATTACCTTTCCTAGGTACTGGTAACCTTCAAGTTGTGGAAATTTCTATAACTAATCTCCGCATACGCAACTTTGTTTCTTTCAATTGCTACACCCAAACTGGTGCTCTCGCCCAGAGATCCAGCTCCTGGATCAACTTGGGCCGCCTCCCTATGTTCTTCTCCACCACCAACAAGTTCACCGTCATCGGCTGCGACACCCTGGCTTTGATCAGTGGCTCCGAGGGGCTCTCCTACACCAGTGGATGCGTCTCCATCTGCTCCAGCAAGGAAAGCGTGATCAATGGCTCTTGTTCTGGCATCGGGTGTTGCCAGACTGCCGTCCCCAGAGGCCTAAAGCGCTTCCAGAGCATGATTGGGAACCTCAACAACCACACCAAAACCTGGCAGTACAATCCTTGCAGTTACGCCTTCCTGGTTGACCAAGATCGCTACAACTTCGAGGTGTCTGATCTGGCGGATCCCAACTTTCTAGCCACCATTCAAAGCTTGCCAGTGGTTTTGGATTGGGTGGTGGGTAACCTGACATGTGAAGAGGCTCGGAAAGGCTTCTCAACCTACGTTTGTCAAGCCAATTCCGAATGCTATGATTCAGAGAGTGGAAGCGGTTATCAATGTGGTTGCAGCCCAGGTTTCAGTGGGAACCCATATCTCACTTCTGGATGCCAAGACATTGACGAGTGTGCAGGCCCCAGCAACCCTTGCGAGGGCATATGCGTGAATACCCCTGGCAGTTATTACTGCTCATGTCCCCACGGTTCTTATGGTGATGGTAAGAAGGACGGCAAGGGCTGCATTACCAAAACCAAGCAATTTCCACTTATTCAACTCTCTCTTGGTCTTGGCTCCACTCTTCTCTTCCTTATCGTCACAGCCACTTGGCTTTACTTCACCATCAAGAAGAGGAATCTCATTAAACTTAGAGAGAAATTCTTCCAACAAAACGGAGGATTCTTATTGCGCCAGCAGTTATCCCAACACCAAGCTGCCGTTGACTCCACAAAAATCTTCACGGCAGAGGAGCTGGAGAAAGCGACCGACAATTATGCTGAGACCCGAATTTTAGGCAAAGGCGGAAACGGGACTGTGTACAAAGGAATTCTGCCAGACGGCAAAATAGTGGCCATTAAGAAGTCCAAGATAGCAGATGAAAGCCAAATTGAACAATTCATCAATGAAGTCATAATTCTGGTCCAAATCAACCACAGAAATGTGGTGAAGCTCTTGGGATGCTGCCTAGAGACGGAGGTTCCTCTGCTTGTCTACGAATTCGTGTCCAATGGAACTCTACATGCCCATATTCATGACAACAACAGCTTTAATAGTAATTCTCTGTCTTGGGAAAACCGGTTGAGAATAGCGACGGAAACAGCTGCAGCTCTTTCCTACCTGCACTCTGCAGCGTCCACACCCATCATTCACAGAGACGTGAAGTCGGCGAACATATTGTTGGACAACAAATGCACTGCAAAAGTAGCCGATTTTGGAGCATCCAAGTTTATCCCAATGGATCAGTCGCAGATCACGACGTTGGTTCAAGGGACGTTTGGTTACTTAGACCCGGAGTATTTCCAAACGAGTCAATTGACGGAGAAGAGCGACGTGTACAGCTTTGGGGTGGTACTGTTAGAGTTGTTGACGGGAGAGTTGCCAGTGTCGTTCGAGAGATCGGAATCCCAGAGAAACCTGTCGTCGTATTTTGTAGCGTCGTTGCGTGAGAAGAGGCTGTTTAGGATACTGGAGGGGAGAGTGCTGAGGGAGGGAAAGAGAGAGCAACTGATAGCAGCAGCGGAGCTAGCCAGGAGATGCTTGAAGCTGAAGGGGGAAGACAGGCCCAGAATGAGAGAAGTGGTGTCGGAGTTAGAACGGTTGAGAAGGGAAGGTGAAGGTGAAGGTGAAGTGACACAAACTTTGTTGGAACCACAACAACAATATGCCTTAAACTCACTGGATTTGTACCCCATTTCCACTTCTACTTTTCAAGCCCATGTCTCCAATTACGAAGCATTCGTATCCGAGTCTAGTTCTTCCCAATACCAATACGACGTCGGATCCTCCTCCTCCACATCCCATCTCGTCCATTCATTCCACCTCTCGCGATGA 2283 48.84 MLHLLLLPFILLASSSAAVDTKPGCPSNCGNVSVPYPFGIGVGCYMATGFDITCNSSYDPPLPFLGTGNLQVVEISITNLRIRNFVSFNCYTQTGALAQRSSSWINLGRLPMFFSTTNKFTVIGCDTLALISGSEGLSYTSGCVSICSSKESVINGSCSGIGCCQTAVPRGLKRFQSMIGNLNNHTKTWQYNPCSYAFLVDQDRYNFEVSDLADPNFLATIQSLPVVLDWVVGNLTCEEARKGFSTYVCQANSECYDSESGSGYQCGCSPGFSGNPYLTSGCQDIDECAGPSNPCEGICVNTPGSYYCSCPHGSYGDGKKDGKGCITKTKQFPLIQLSLGLGSTLLFLIVTATWLYFTIKKRNLIKLREKFFQQNGGFLLRQQLSQHQAAVDSTKIFTAEELEKATDNYAETRILGKGGNGTVYKGILPDGKIVAIKKSKIADESQIEQFINEVIILVQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLHAHIHDNNSFNSNSLSWENRLRIATETAAALSYLHSAASTPIIHRDVKSANILLDNKCTAKVADFGASKFIPMDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLLELLTGELPVSFERSESQRNLSSYFVASLREKRLFRILEGRVLREGKREQLIAAAELARRCLKLKGEDRPRMREVVSELERLRREGEGEGEVTQTLLEPQQQYALNSLDLYPISTSTFQAHVSNYEAFVSESSSSQYQYDVGSSSSTSHLVHSFHLSR 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33629984 33632428 + CePI673135_11g019570.1 Cec11g1957 217169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1957 760 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Cec11g1957 760 CDD STKc_IRAK 415 684 - -
Cec11g1957 760 ProSitePatterns Calcium-binding EGF-like domain signature. 284 308 IPR018097 GO:0005509(InterPro)
Cec11g1957 760 Gene3D Laminin 235 286 - -
Cec11g1957 760 SMART egfca_6 284 326 IPR001881 GO:0005509(InterPro)
Cec11g1957 760 SMART egf_5 287 326 IPR000742 -
Cec11g1957 760 SMART egf_5 236 283 IPR000742 -
Cec11g1957 760 FunFam Fibrillin 2 283 321 - -
Cec11g1957 760 ProSiteProfiles EGF-like domain profile. 284 317 IPR000742 -
Cec11g1957 760 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 299 310 IPR000152 -
Cec11g1957 760 Pfam Protein kinase domain 409 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1957 760 SUPERFAMILY Protein kinase-like (PK-like) 388 682 IPR011009 -
Cec11g1957 760 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1957 760 FunFam Wall-associated receptor kinase 2 379 484 - -
Cec11g1957 760 Pfam Calcium-binding EGF domain 284 325 IPR049883 -
Cec11g1957 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec11g1957 760 FunFam Wall-associated receptor kinase 2 485 703 - -
Cec11g1957 760 Gene3D Transferase(Phosphotransferase) domain 1 485 701 - -
Cec11g1957 760 SUPERFAMILY EGF/Laminin 282 326 - -
Cec11g1957 760 FunFam Wall-associated receptor kinase 2 235 282 - -
Cec11g1957 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 698 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cec11g1957 760 Gene3D Phosphorylase Kinase; domain 1 383 484 - -
Cec11g1957 760 CDD EGF_CA 284 317 - -
Cec11g1957 760 Pfam Wall-associated receptor kinase galacturonan-binding 25 82 IPR025287 GO:0030247(InterPro)
Cec11g1957 760 SMART serkin_6 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1957 760 Gene3D Laminin 287 327 - -
Cec11g1957 760 Pfam Wall-associated kinase 156 232 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0647 Cec-Chr8:18209730 Cec11g1957 Cec-Chr11:33629984 1.70E-189 dispersed
Cec08g0648 Cec-Chr8:18232063 Cec11g1957 Cec-Chr11:33629984 8.20E-175 dispersed
Cec08g0649 Cec-Chr8:18250395 Cec11g1957 Cec-Chr11:33629984 4.90E-72 dispersed
Cec10g1973 Cec-Chr10:34510559 Cec11g1957 Cec-Chr11:33629984 4.50E-79 dispersed
Cec11g1957 Cec-Chr11:33629984 Cec10g1331 Cec-Chr10:27598337 1.40E-55 dispersed
Cec03g1130 Cec-Chr3:24520910 Cec11g1957 Cec-Chr11:33629984 1.20E-63 transposed
Cec11g0896 Cec-Chr11:12041589 Cec11g1957 Cec-Chr11:33629984 2.10E-119 transposed
Cec11g0897 Cec-Chr11:12076349 Cec11g1957 Cec-Chr11:33629984 5.80E-61 transposed
Cec11g1957 Cec-Chr11:33629984 Cec08g1030 Cec-Chr8:22233607 1.30E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72436 PF00069 Pkinase 1.70E-49 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1957 - - - 0.0