Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00022 ATGGACCAAGAGACCTTCCTCGTGGATTCTTCCTTCATCCAACCCATCCAGCACCGCCCCAAGCTCCATCCCTTCCAACCCACCGACCAAGTCCCAACCATAGATCTCTCCATCTCCCCCTCTCGTACCACCCAACACCTTGTCTCCGAAATTGCGTCTGCCTGCCAGAACTGGGGTTTCTTCCAGCTAATCAACCATGGAGTTTCCCTCGAGACGCTCGCGCGATTCGAGAAAGCTGCCAAGTTATTTTTTGACCAGACGGTGGAGGAGAAAAGGAAGGTGAAGAGAGATGCAGGTAATGCTGTGGGATTTTATGACGGTGAGAATACGAAAAACGTTAGGGATTGGAAGGAGGTCTTTGATTTCTTGGTTAAGGATGGGACGTTCTTTCCAGCTTCGCATGATCCAAATGATACGAAATTGAGGGTATTGTTTAATCATTGGCCGGAATATCCCCCTGGATTTAGGGAAACGTGCGAGGAGTATGCCAGAGAGATGGAATTGCTAGCACATAAGCTACTGAGGTTGATTCTTTTGAGTCTAGGCTTATCTGGTGCTGATGGATTGAAGGGCTATTTCAATGACGAGCAAATGAGCTTGATGAGGTTGAATCGGTACCCTCCATGTCCGTCACCGGATCTTGTGCTCGGCGTAGGCCGTCACAAAGATTCTGGTGCCTTGACAATCCTTGCTCAAGATGCTGTTGGAGGGCTGCAAGTGAGGAGAAAATCAGATGGAGAGTGGATTCCTGTCAAACCAATCCCAAATGCCTATATTGTTAACATTGGCGATGTTGTTCAAGTTTGGAGCAATGACAAATATGAAAGTGTGGAGCACAGAGTGGTAGTGAATAGTGAGAAAGAAAGGTATTCGTTTCCATTCTTCTTCTTTCCAGCTCACCATATGATGGTGAAGCCATTGGAGGAGGTTGTGGATGAGCAAAACCCACCAAAATACAGAGAATACAACTTCGGAAAGTTTATTGCTTCGAGGAGCCGCGGTAACGGCCAGAACCAAGAAGTGGAAAACATCCAAATTCATCATTTCAGGGCCAGGCTGCATCAATAA 1068 47.1 MDQETFLVDSSFIQPIQHRPKLHPFQPTDQVPTIDLSISPSRTTQHLVSEIASACQNWGFFQLINHGVSLETLARFEKAAKLFFDQTVEEKRKVKRDAGNAVGFYDGENTKNVRDWKEVFDFLVKDGTFFPASHDPNDTKLRVLFNHWPEYPPGFRETCEEYAREMELLAHKLLRLILLSLGLSGADGLKGYFNDEQMSLMRLNRYPPCPSPDLVLGVGRHKDSGALTILAQDAVGGLQVRRKSDGEWIPVKPIPNAYIVNIGDVVQVWSNDKYESVEHRVVVNSEKERYSFPFFFFPAHHMMVKPLEEVVDEQNPPKYREYNFGKFIASRSRGNGQNQEVENIQIHHFRARLHQ* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 170353 172113 + Chy1G000220.1 Chy01g00022 217203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00022 355 PRINTS Isopenicillin N synthase signature 221 242 - -
Chy01g00022 355 PRINTS Isopenicillin N synthase signature 51 68 - -
Chy01g00022 355 PRINTS Isopenicillin N synthase signature 286 304 - -
Chy01g00022 355 SUPERFAMILY Clavaminate synthase-like 9 334 - -
Chy01g00022 355 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 8 341 - -
Chy01g00022 355 Pfam non-haem dioxygenase in morphine synthesis N-terminal 31 150 IPR026992 -
Chy01g00022 355 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 298 IPR005123 -
Chy01g00022 355 Gene3D - 1 338 IPR027443 -
Chy01g00022 355 PANTHER DIRIGENT PROTEIN 8 341 - -
Chy01g00022 355 Pfam 2OG-Fe(II) oxygenase superfamily 200 298 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00022 - - - csv:101209915 660.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00022 Chy-Chr1:170353 Chy01g00025 Chy-Chr1:180415 2.83E-142 dispersed
Chy01g00022 Chy-Chr1:170353 Chy01g00024 Chy-Chr1:176073 4.29E-132 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g494 . . . . . . . . . Cmo11g01335 . . . . . Cpe04g00259 . . . . . . . . Cla02g00570 Cam02g0600 Cec02g0600 Cco02g0611 Clacu02g0596 Cmu02g0594 . . . . . . . . Cme01g00017 . . . . Bpe15g00885 . . . . . . . . Car11g01076 . . . . . . . . . . . . . . . . . Lsi11g01040 . Chy01g00022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00022 Chy_Chr01 FPKM 11.273889 11.060422 7.743168 7.415775 24.190935 24.967813 24.791126 6.4953 6.00547 7.319569