Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00024 ATGGGAGATCTGGAGGATTTCATCCAAGCCCCGGAGCACCGCCCCAAACTCGCACTCTCCCATGTTGATGGAATCCCCATCATCGACCTCTCTCCAATCTTCAACTCACTACCCGGCAGCGATTTCCCCCACGATTTGGTCCACCAAATCGCCTCTGCTTGCACGGAGTGGGGATTCTTTCTGCTAGTTAACCACGACGTCCCTCCCGAGAAGCGGCACCGTATAGAGGCCGCTGCCCGGGAATTTTTCGGCCAAAGTTTGGATGAGAAGAGGAAAGTGAGGAGAAGCGAAGGGTTGGTGACGGGCTACTTTGATTCGGAGCTGACCACGAACGTCAGAGATTGGAAGGAGGTGTTTGATCTCGTGGTGGAGGATCCCACCATTGTTCCGGCGTCGCCCGAGTCTGATGATGACGAGTTGACTCAGTGGACTAACCAATGGCCGGAATACCCACCGGAATTCAGGGAGAGTTGCAAGGAATATGCTGAAGAATTAGAGAAACTTGGACACAAATTGATGGGACTACTCGCCCTTAGCTTGGGATTGTCCGCAAAAAGGTTTCAACACTATTTCAAACAGCAAACCAGTTTCTTGAGACTCAATCACTATCCCCCCTGCCCATCACCGGAGTTGACTCTCGGGGTTGGGCGCCACAAGGATCCCGGCGTCCTAACGGTGCTCGCCCAAGACGATGTCGGAGGACTGGAGGTGAAAAGGAAGAGAGATGGAGAGTGGATACGGGTCAAACCCGTACCCGATTCTTTCGTTGTGAATGTTGGAGAGATTACTCAGGTTTGGAGCAATGAGAAGTATGAAAGTGTGGAGCATAGAGTTATGGTTAACAGCGAAAAGGATAGATATTCCATTCCTTTCTTCTTCAACCCATCTCATTCCACCATTGTTGAGCCTTTGAAAGGGCTGGTTGATTCCCAAAACCCCCCGAAATACAAATCTTACTCTTATGGAAAGTTTCTTACCAATAGACAACGCAGCAACTTCAAGAAACTTAATACTGACAACATCCAAATCTCTGATTTCAAGATCACCAACTAG 1053 49.48 MGDLEDFIQAPEHRPKLALSHVDGIPIIDLSPIFNSLPGSDFPHDLVHQIASACTEWGFFLLVNHDVPPEKRHRIEAAAREFFGQSLDEKRKVRRSEGLVTGYFDSELTTNVRDWKEVFDLVVEDPTIVPASPESDDDELTQWTNQWPEYPPEFRESCKEYAEELEKLGHKLMGLLALSLGLSAKRFQHYFKQQTSFLRLNHYPPCPSPELTLGVGRHKDPGVLTVLAQDDVGGLEVKRKRDGEWIRVKPVPDSFVVNVGEITQVWSNEKYESVEHRVMVNSEKDRYSIPFFFNPSHSTIVEPLKGLVDSQNPPKYKSYSYGKFLTNRQRSNFKKLNTDNIQISDFKITN* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 176073 178894 + Chy1G000240.1 Chy01g00024 217205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00024 350 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 6 340 - -
Chy01g00024 350 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 295 IPR005123 -
Chy01g00024 350 SUPERFAMILY Clavaminate synthase-like 7 334 - -
Chy01g00024 350 PRINTS Isopenicillin N synthase signature 50 67 - -
Chy01g00024 350 PRINTS Isopenicillin N synthase signature 320 338 - -
Chy01g00024 350 PRINTS Isopenicillin N synthase signature 283 301 - -
Chy01g00024 350 PRINTS Isopenicillin N synthase signature 218 239 - -
Chy01g00024 350 Gene3D - 4 335 IPR027443 -
Chy01g00024 350 Pfam 2OG-Fe(II) oxygenase superfamily 196 295 IPR044861 -
Chy01g00024 350 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE, NON-HEME DIOXYGENASE DOMAIN-CONTAINING PROTEIN-RELATED 6 340 - -
Chy01g00024 350 Pfam non-haem dioxygenase in morphine synthesis N-terminal 25 149 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00024 - - - csv:101209423 685.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00024 Chy-Chr1:176073 Chy06g00685 Chy-Chr6:4684088 7.19E-58 dispersed
Chy01g00022 Chy-Chr1:170353 Chy01g00024 Chy-Chr1:176073 4.29E-132 proximal
Chy01g00024 Chy-Chr1:176073 Chy01g00025 Chy-Chr1:180415 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g487 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01037 . Chy01g00024 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00024 Chy_Chr01 FPKM 27.627876 29.410286 7.32986 7.519164 58.848053 64.37056 56.010815 0.418348 0.271061 0.373868