Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00038 ATGCCGTCCAAGGGAAAGAAGAACGCAAAGACACTCTGTAGATTGTCTAACTCAAACCACTCTCAATCTCCTGTGTCACGGTTCACAATACCTCCTGTCTCCCAAGTTTCTGAAGATGAGTTTCTTTCCTCCATTGAAGAAGCTTCAAGTAAATATCCTTTTTTGATTGATAAATCTGCTTTTGTTGGAAGACTTATTAAGGATCATGTTCAATCTACTGGCTGTAAAGTTTGGCTTTCTGAATCTTCTATGCTTGCTTCTAGCTTCACCCAAGGAGCTATTGTCTCGGTAGCACTTAGTTCGGAGGGAGGTAACTTTCCTCTGTCCTCTTTAGCAGACGAATGTGGTATGCACTTTGGGGTTGATTATGGAGATTCAATAATCCATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCTTCTGGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAAACCTTTCATTTACCTTGGGGTGCCCTACAATTGGCCGTGTTGTGTTTATCTCTCCTTTGAAAACCCATCTTTGCAATGATCCATTAAATGATAATGGAAAATTGAAGAGCACAGAAAACCTTTTGAGAATATACAATTGTAAGGAACTGTTTCTGGATCTAGCGTCTTCAACCTATGTATCAACAAAAGACAACTTATTCTCATCCTCAACTATTTATTCAAGAAAGGTTCATGGTCGTAGTGAAAGTGGTAATTTAACATCCCCAAGCACCATGCGGTCTGCTTCTCCTAAACGTGATGAGGTGGTATCAAACTTACCAAGTCCATTTACTCATTCACTTATTAAGGAGTCCTTAGGAGATGATACCGTCAGAAAAACTCTACAGATGATTGCCTCCAATGAGTTGTATAAACGTTGTGTGCTACGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATATTTGTACATTTCATGTAAGGGGTGCGAAAGGACTGTCAGGATATGATGACTCTTATGATTCTGTGCACAGTGGAAGCGACAATCATTTTCAACATTATTCATCAGATGAATATGCAAATTGTGCTTTCAATATAGACCAGCTGACAAGAGTATTTATAAATGTTCAATCAACCATGGTCTCAGAGACAACTCAAGAATTCTTTCCATCAAATGTGGAACCACAAAATCTAAATATCAGAGCTAAAGTAAAGCCGAAAGTTTGGAAATTGGGTGGTCTTTCAAAAGAATATTCAGTTTTGAAGGATATTATAATTGCTTCATCCTTAAATAGCACCATGTCAAGCCTTGGTTTTCGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATCTGCACATGACGCTGGTGTCAACCTGTTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCGCTGCATGACGTTTTTGAGGAGGCAAACCAAGCTGCACCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGCACCTGCAAGAAAAGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACACTGCTTAATCTAATGGATGGGATCAAGCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGACCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGCGTGCCTTCTCCCAACCAAAGGTTGGATATTCTACATACAATACTTAGTGAAATGGAGCACTCTCTTTCAGTCGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTTGTGGGTGCTGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCAAAAGTTTAAAGTTTCTTCTGATTATCATAGTTTTGGTAGATCTGCTATAGCAGAGGAACAGCACAAGTTTAATGAGGTGGCTCACAAAGCCAATGACGATCAAATGATATTGGAACCTGTTCTCTTACAAGATGAAGGAAGTATATCAGGGGTTTGCCAAAACCTTGCGTCTTCATCAATCTCTGAACATACTTTTACATCTGACCCACTAACATGTGTGCCCTTGAATGAAGTGGTTGCTGATAGCGAGGATAGTTTTAACTCTTCTGAAATCAAGTGTAAATTGAAGGTTGTTTTCGAAGACTTTGAGATAGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAAGTAAAATGGGAAGATATTGGTGGACAAATGGAGGTTAAGGCTCAATTAATGGAAACAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAACGAATAGGGACTCGACCTCCAGCAGGAGTGTTATTGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGAGCTAATGCCCCATCAATCGTGTTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGCTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGACCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGCTGCTTTATGTTGGGCCCCCAAACGAATCTGAGCGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGCACGAGGAAGTTGGCTTCTCTTAGTCAAGGGTGTACGGGGGCTGACATATCATTAATTTGCAGAGAATCAGCTTTACTTGCCCTTGAGGAGAACCTTGAGGCGTCAGTAATAAGCATGCAACATTTAGAAACTGCAGCTAGACACGTGAAGCCATCTGAAACTGAACCTTACCGAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGTTAATGTTGTATGTCAGCAGTCACGATCTAACTGGTTTTCTTTTTGGCCCCTTGTAAAATCAGCTGTGCTACTCTTTTCTCGTGTTCGTCACATGCTTGAAGGCGTCAAATGA 3156 41.41 MPSKGKKNAKTLCRLSNSNHSQSPVSRFTIPPVSQVSEDEFLSSIEEASSKYPFLIDKSAFVGRLIKDHVQSTGCKVWLSESSMLASSFTQGAIVSVALSSEGGNFPLSSLADECGMHFGVDYGDSIIHEAGNYFALARIFSSGKELNDGVQLSTNLSFTLGCPTIGRVVFISPLKTHLCNDPLNDNGKLKSTENLLRIYNCKELFLDLASSTYVSTKDNLFSSSTIYSRKVHGRSESGNLTSPSTMRSASPKRDEVVSNLPSPFTHSLIKESLGDDTVRKTLQMIASNELYKRCVLRGNLVTIPVLSDICTFHVRGAKGLSGYDDSYDSVHSGSDNHFQHYSSDEYANCAFNIDQLTRVFINVQSTMVSETTQEFFPSNVEPQNLNIRAKVKPKVWKLGGLSKEYSVLKDIIIASSLNSTMSSLGFRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEEANQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGIKRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYQKFKVSSDYHSFGRSAIAEEQHKFNEVAHKANDDQMILEPVLLQDEGSISGVCQNLASSSISEHTFTSDPLTCVPLNEVVADSEDSFNSSEIKCKLKVVFEDFEIARMKVRPSAMREVILEVPKVKWEDIGGQMEVKAQLMETVEWPQKHQDAFKRIGTRPPAGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLSQGCTGADISLICRESALLALEENLEASVISMQHLETAARHVKPSETEPYRELSSRFQRLVCSSSQEVNVVCQQSRSNWFSFWPLVKSAVLLFSRVRHMLEGVK* 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 263149 274102 + Chy1G000380.1 Chy01g00038 217219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00038 1051 SMART AAA_5 780 918 IPR003593 -
Chy01g00038 1051 SMART AAA_5 429 565 IPR003593 -
Chy01g00038 1051 Gene3D - 741 988 IPR027417 -
Chy01g00038 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 991 IPR027417 -
Chy01g00038 1051 Pfam ATPase family associated with various cellular activities (AAA) 433 562 IPR003959 GO:0005524|GO:0016887
Chy01g00038 1051 Pfam ATPase family associated with various cellular activities (AAA) 784 915 IPR003959 GO:0005524|GO:0016887
Chy01g00038 1051 ProSitePatterns AAA-protein family signature. 886 904 IPR003960 GO:0005524|GO:0016887
Chy01g00038 1051 PANTHER AAA-FAMILY ATPASE 49 1014 - -
Chy01g00038 1051 MobiDBLite consensus disorder prediction 233 253 - -
Chy01g00038 1051 CDD AAA 750 916 - -
Chy01g00038 1051 Gene3D - 387 562 IPR027417 -
Chy01g00038 1051 CDD AAA 431 562 - -
Chy01g00038 1051 Pfam AAA+ lid domain 587 624 IPR041569 -
Chy01g00038 1051 Pfam AAA+ lid domain 938 983 IPR041569 -
Chy01g00038 1051 Gene3D - 917 987 - -
Chy01g00038 1051 MobiDBLite consensus disorder prediction 233 257 - -
Chy01g00038 1051 PANTHER - 49 1014 - -
Chy01g00038 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 621 IPR027417 -
Chy01g00038 1051 Gene3D - 563 692 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00038 Chy-Chr1:263149 Chy08g00861 Chy-Chr8:16065369 1.00E-35 dispersed
Chy01g00038 Chy-Chr1:263149 Chy02g02596 Chy-Chr2:29168226 7.44E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00038 - - csv:101220574 1983.38