Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00045 ATGGAGAAATCCGTTTTTCTCCGTTCTCTCACCTGTTCTTCTTTAGTCTGTAACAGAATCTTCTTCCGTTCAGCTCACCGCTTATGTCCCTCTACATTGCCCCCACGTTCATCTTCTGTTTCCAGGAAATTACACCGTTTCAATCCCAGCTTCAGCAGACGCTCACTTCTCCCTCGTCAATTGAAATTACTGCCGGCTTATTCTCAATCTCAGTTTGCAGAAGTGTCAGATGAAGTTGCTGAGAAGCTTGGATTTGAGAAAGTCTCTGAGGAATTTATTGGTGAGTGCAAATCAAAAGCTGTGCTTTTTAGACATAAGAAGACTGGTGCGGAGGTGATGTCTATGTCTAATGATGATGAGAACAAGGTCTTTGGGATCGTATTCCGTACACCACCGAGTGATTCTACTGGAATTCCACACATATTAGAACACAGTGTGTTGTGTGGATCAAGGAAGTACCCAGTGAAGGAGCCTTTTGTTGAATTATTGAAAGGAAGCTTACACACATTCTTAAATGCGTTTACATATCCTGATAGGACATGCTACCCGGTTGCTTCAACAAATACTAAGGATTTTTATAATCTTGTTGATGTATACTTGGATGCGGTCTTCTTTCCTAAGTGTGTGGAGGACTTTAAGACGTTTCAACAAGAGGGTTGGCATTATGAACTAAACGACCCATCAGAAGACATATCTTATAAAGGGGTGGTATTCAATGAAATGAAAGGAGTTTATTCGCAGCCAGACAATATCCTAGGACGAGTTACTCAACAGGCTCTTTTTCCGGACAATACATATGGAGTTGATAGTGGAGGAGACCCACGAGTTATTCCCAAGCTTACATTTGAGGAATTCAAGGAATTTCACAGTAAGTTTTACCACCCAGGAAATGCAAGGATCTGGTTTTATGGAGATGATGATCCTGTAGAACGTCTGCGCATTTTGAAAGACTATCTAGATATGTTTGATGCAAGTCCTGTTTCCGACCAGTCTAAGATTGGGCAACAAAGGTTATTCTCAGAGCCGGTCAGGATTGTTGAGAAGTATCCTTCTGGTGATGGAGGTGATTTGAAAAAAAAGCACATGGTCTGCGTCAATTGGTTGCTTTCTGAAAAGCCCTTAGACTTGGAAACTGAGCTAGCTCTTGGGTTTTTGGACCATCTTATGCTGGGCACTCCTGCCTCTCCACTGAGGAAAATCTTACTAGAGAGTGGTCTAGGAGAAGCCATTCTTGGTGGTGGGATTGAGGATGAGCTCTTACAACCGCAGTTTAGTATTGGATTGAAGGGTGTTTTGGATGATGACATTCCAAAAGTAGAAGAATTAATTTTAAATACCTTTAAGAAATTAGCAGAGGAAGGCTTTGACAATGATGCAGTAGAGGCTTCCATGAATACCATTGAGTTTTCCCTGCGGGAAAATAATACTGGTTCTTTCCCTCGTGGCTTGTCACTTATGCTCCGATCCATTGGTAAGTGGATATATGATATGAATCCATTTGAACCATTGAAATATGAAGAGCCACTGAAAGCCTTGAAAGCAAGAATAGCTGCAGAAGGACCCAAAGCTGTGTTTTCTCCTTTGATTGAGAAATTCATCTTGAACAACCCTCATCGTGTAACTATTGAGATGCAGCCTGATCCAGAGAAAGCTTCTCGTGATGAAGCAACTGAGAAGGAAATCTTGCAGAAAGTTAAAGAAAGCATGACTGAAGAAGATCTTGCTGAACTAGCACGTGCTACACAGGAATTGCGTCTGAAACAGGAAACACCTGATCCACCAGAAGCTTTAAAATGTGTTCCATGCCTTTGCCTTGAAGATATTCCTAAAGAACCTACTCGTGTTCCAACAGAAATTGGGAATGTTAATGGAGTAACCGTCTTACAACATGATCTTTTCACAAATGATGTTCTTTATTCTGAAGTTGTTTTTGATATGAGTTCACTGAAGCAGGAGCTTCTCCCTCTGGTACCTTTATTTTGCCAATCATTGTTAGAGATGGGCACAAAAGATTTGACTTTTGTGCAACTTAATCAGTTAATTGGAAGGAAAACTGGTGGGATCTCAGTTTATCCATTCACGTCATCTATTCGAGGAAATGACAAGGCATGTACTCATATGGTTGTGAGAGGCAAGGCTATGTCAGGATGTGCTGAAGACTTGTTCAACCTGATGAACTGCATTCTTCAAGAAGTACAGTTTACCGATCAGCAACGTTTTAAACAGTTTGTATCTCAGAGCAAATCACGAATGGAGAATCGGTTGAGGGGTAGTGGTCATGGAATTGCTGCGGCTAGGATGGATGCAAAGTTGAACAGTGCAGGGTGGATCTCTGAACAAATGGGTGGTCTCAGCTATATGGAATTCCTGCAAACTCTTGAAGAGAAAGTTGATCAAAACTGGACTGAAATTTCTTCATCACTTGAGGAAATCCGCCAATCCTTACTTTCAAGGAAAAATTGCCTAGTCAACATCACTGCTGATGGAAAAAATCTCATAAAGTCGGAGAAGTTCATTGGCAAATTTCTTGATTTGCTTCCTAATCAACCCATCATTAAGAACAGCACTTGGAATGCTCGGCTTTCTTCAGATAATGAAGCCATTGTGATACCTACTCAGGTTAATTACGTTGGAAAAGCAGCTAACATATATGAAACTGGCTATCAACTTGATGGAAGTGCCTATGTTATTTCAAAGTTTATTAGTAATACTTGGCTGTGGGATCGTGTTAGAGTAAGTGGAGGTGCTTATGGTGGATTTTGTGATTTTGATTCTCATTCAGGAGTGTTCTCCTTTTTATCTTATCGTGACCCAAATTTGTTAAAGACACTTGATGTATATGATGGAACCGTTGATTTTCTACGTGAATTGGAATTGGATGATGATACCCTAGCAAAAGCCATAATTGGAACCATTGGAGATGTTGATTCATACCAGCTTCCTGATGCTAAAGGTTATAGTAGCTTGTTGCGGTATTTATTAGGAATTACGGAAGAAGAAAGGCAAAGGAGAAGGGAAGAGATTTTATCAACCAGCTTGAAAGACTTCAAGAACTTTGCTGACGCACTCGAGGCAGTTAGAAACAAAGGAGTTGTAGTTTCAGTTGCATCTCCCGAAGACGTCGAAACTGCACACGGTGAACGCCCTGGGTTTTTTCAAGTGAAGAAAGCCCTCTAA 3177 40.92 MEKSVFLRSLTCSSLVCNRIFFRSAHRLCPSTLPPRSSSVSRKLHRFNPSFSRRSLLPRQLKLLPAYSQSQFAEVSDEVAEKLGFEKVSEEFIGECKSKAVLFRHKKTGAEVMSMSNDDENKVFGIVFRTPPSDSTGIPHILEHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVEDFKTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRVTQQALFPDNTYGVDSGGDPRVIPKLTFEEFKEFHSKFYHPGNARIWFYGDDDPVERLRILKDYLDMFDASPVSDQSKIGQQRLFSEPVRIVEKYPSGDGGDLKKKHMVCVNWLLSEKPLDLETELALGFLDHLMLGTPASPLRKILLESGLGEAILGGGIEDELLQPQFSIGLKGVLDDDIPKVEELILNTFKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLRSIGKWIYDMNPFEPLKYEEPLKALKARIAAEGPKAVFSPLIEKFILNNPHRVTIEMQPDPEKASRDEATEKEILQKVKESMTEEDLAELARATQELRLKQETPDPPEALKCVPCLCLEDIPKEPTRVPTEIGNVNGVTVLQHDLFTNDVLYSEVVFDMSSLKQELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPFTSSIRGNDKACTHMVVRGKAMSGCAEDLFNLMNCILQEVQFTDQQRFKQFVSQSKSRMENRLRGSGHGIAAARMDAKLNSAGWISEQMGGLSYMEFLQTLEEKVDQNWTEISSSLEEIRQSLLSRKNCLVNITADGKNLIKSEKFIGKFLDLLPNQPIIKNSTWNARLSSDNEAIVIPTQVNYVGKAANIYETGYQLDGSAYVISKFISNTWLWDRVRVSGGAYGGFCDFDSHSGVFSFLSYRDPNLLKTLDVYDGTVDFLRELELDDDTLAKAIIGTIGDVDSYQLPDAKGYSSLLRYLLGITEEERQRRREEILSTSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHGERPGFFQVKKAL* 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 323910 334839 + Chy1G000450.1 Chy01g00045 217226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00045 1058 Gene3D - 329 567 - -
Chy01g00045 1058 SMART M16C_assoc_2 544 793 IPR013578 GO:0006508
Chy01g00045 1058 Gene3D - 576 1030 - -
Chy01g00045 1058 SUPERFAMILY LuxS/MPP-like metallohydrolase 861 1037 IPR011249 GO:0046872
Chy01g00045 1058 Pfam Peptidase M16 inactive domain 279 466 IPR007863 -
Chy01g00045 1058 Pfam Peptidase M16C associated 544 793 IPR013578 GO:0006508
Chy01g00045 1058 PANTHER PRESEQUENCE PROTEASE 35 1058 - -
Chy01g00045 1058 PANTHER PRESEQUENCE PROTEASE 1, CHLOROPLASTIC/MITOCHONDRIAL 35 1058 - -
Chy01g00045 1058 Gene3D - 66 327 - -
Chy01g00045 1058 Gene3D - 611 860 - -
Chy01g00045 1058 SUPERFAMILY LuxS/MPP-like metallohydrolase 603 857 IPR011249 GO:0046872
Chy01g00045 1058 SUPERFAMILY LuxS/MPP-like metallohydrolase 84 326 IPR011249 GO:0046872
Chy01g00045 1058 Pfam Insulinase (Peptidase family M16) 132 207 IPR011765 -
Chy01g00045 1058 SUPERFAMILY LuxS/MPP-like metallohydrolase 336 601 IPR011249 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00045 K06972 PITRM1, PreP, CYM1; presequence protease [EC:3.4.24.-] - csv:101206839 2078.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g436 . . . . . . . . Cmo19g00631 Cmo11g01352 . . . . Sed10g2040 Cpe04g00272 Cpe15g00496 Bhi05g01130 Tan02g0898 Cmetu01g1020 . Hepe02g0577 . . Cla02g00589 Cam02g0621 Cec02g0620 . Clacu02g0619 Cmu02g0614 . Cone12ag1102 . . . . Csa07g00770 . Cme01g00039 Blo04g00491 . . Bda14g00521 Bpe15g00893 . Bma03g00522 . . . . Cma11g01760 Cma19g00612 . Car19g00465 . . . . . . . . . . . . . . . . Lsi11g01018 . Chy01g00045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008932 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00045 Chy_Chr01 FPKM 2.854396 3.036204 5.776562 5.440903 3.556639 2.80673 3.52982 0.130784 0.221672 0.24577