Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00047 ATGGATTGGATGAATGGTTGCCATGTCTTTAAGACGTTATGCATTTCATCAGAGTTGAAAATGGTGGAATCGAACCTGACTTATGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAGCTTGTTGATGCTTTCAAATCTTCCAGTCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGTCAAACACTCGATGTCTCGTCCTTCTCTGTGAGAAGGTCTAGCCGTTTTGCCGATAAGCCCCCTATGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATTAGAAGAAGTTATCAAAGGAGAGATTTGTTGAATCGGATTTATGCTTCAGATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACCTTCAATCAAGCCTGGAATCTGAGTACCCCAGTTTTGTGAAGCCAATGCTTCAGTCACATGTTTCAGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGACACATCTTCCCCATGAGGATGAAATTCTAACTTTGGTGGACGAGGATGAAAATGAGTTCCAAACGAAATACCTTGCCGACAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAATCCAACTGAATTCAAGGTATATATCATCAGGACATATAATTCAGCAGACAAAGAAGATACCAAAGAGGGTTCTGACGCCACCCAATTGGAAAGCAGTGGCAAAAAGAACACCAAATCATCAGGGCACAAATCCAGGGCAAATAATTCCGAGGATAAAGGAGATAACGATGAGAATTCAGAAATCTTTCAGTTGGAAAAAGGTGGTAAAAGAACTACTAGATCATCAAGGGGTAAAAGCAGGGCAAATAAATCTGAAGATAAATCAGATACCGGCACGGATTCCAACGACCCCCAGTTCGGAAAAAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGTGTAACATCAAGATATGATGATACTGACATGAACCTCTAG 1059 42.21 MDWMNGCHVFKTLCISSELKMVESNLTYEECRRQRLEENKKRMEELNLNKLVDAFKSSSPKSSPTKQLKRPRQTLDVSSFSVRRSSRFADKPPMNYKEVPIEPLPGIRRSYQRRDLLNRIYASDEERQYAIDRARDLQSSLESEYPSFVKPMLQSHVSGGFWLGLPVQFCKTHLPHEDEILTLVDEDENEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTNPTEFKVYIIRTYNSADKEDTKEGSDATQLESSGKKNTKSSGHKSRANNSEDKGDNDENSEIFQLEKGGKRTTRSSRGKSRANKSEDKSDTGTDSNDPQFGKSGKRITRSSSKGVTSRYDDTDMNL* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 341056 348568 + Chy1G000470.1 Chy01g00047 217228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00047 352 SMART B3_2 148 239 IPR003340 GO:0003677
Chy01g00047 352 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 22 242 - -
Chy01g00047 352 MobiDBLite consensus disorder prediction 54 77 - -
Chy01g00047 352 Pfam B3 DNA binding domain 148 237 IPR003340 GO:0003677
Chy01g00047 352 MobiDBLite consensus disorder prediction 320 352 - -
Chy01g00047 352 MobiDBLite consensus disorder prediction 244 352 - -
Chy01g00047 352 SUPERFAMILY DNA-binding pseudobarrel domain 141 237 IPR015300 -
Chy01g00047 352 Coils Coil 19 46 - -
Chy01g00047 352 MobiDBLite consensus disorder prediction 271 319 - -
Chy01g00047 352 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 22 242 IPR044837 -
Chy01g00047 352 Gene3D - 123 240 IPR015300 -
Chy01g00047 352 ProSiteProfiles B3 DNA-binding domain profile. 148 239 IPR003340 GO:0003677
Chy01g00047 352 CDD B3_DNA 146 237 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00047 Chy-Chr1:341056 Chy03g01525 Chy-Chr3:17505321 2.20E-80 dispersed
Chy01g00047 Chy-Chr1:341056 Chy03g01523 Chy-Chr3:17501677 2.00E-73 wgd
Chy01g00047 Chy-Chr1:341056 Chy06g01091 Chy-Chr6:9106154 2.36E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17236 PF02362 B3 3.40E-15 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00047 - - csv:101206354 603.594