Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy01g00047 | ATGGATTGGATGAATGGTTGCCATGTCTTTAAGACGTTATGCATTTCATCAGAGTTGAAAATGGTGGAATCGAACCTGACTTATGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAGCTTGTTGATGCTTTCAAATCTTCCAGTCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGTCAAACACTCGATGTCTCGTCCTTCTCTGTGAGAAGGTCTAGCCGTTTTGCCGATAAGCCCCCTATGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATTAGAAGAAGTTATCAAAGGAGAGATTTGTTGAATCGGATTTATGCTTCAGATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACCTTCAATCAAGCCTGGAATCTGAGTACCCCAGTTTTGTGAAGCCAATGCTTCAGTCACATGTTTCAGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGACACATCTTCCCCATGAGGATGAAATTCTAACTTTGGTGGACGAGGATGAAAATGAGTTCCAAACGAAATACCTTGCCGACAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAATCCAACTGAATTCAAGGTATATATCATCAGGACATATAATTCAGCAGACAAAGAAGATACCAAAGAGGGTTCTGACGCCACCCAATTGGAAAGCAGTGGCAAAAAGAACACCAAATCATCAGGGCACAAATCCAGGGCAAATAATTCCGAGGATAAAGGAGATAACGATGAGAATTCAGAAATCTTTCAGTTGGAAAAAGGTGGTAAAAGAACTACTAGATCATCAAGGGGTAAAAGCAGGGCAAATAAATCTGAAGATAAATCAGATACCGGCACGGATTCCAACGACCCCCAGTTCGGAAAAAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGTGTAACATCAAGATATGATGATACTGACATGAACCTCTAG | 1059 | 42.21 | MDWMNGCHVFKTLCISSELKMVESNLTYEECRRQRLEENKKRMEELNLNKLVDAFKSSSPKSSPTKQLKRPRQTLDVSSFSVRRSSRFADKPPMNYKEVPIEPLPGIRRSYQRRDLLNRIYASDEERQYAIDRARDLQSSLESEYPSFVKPMLQSHVSGGFWLGLPVQFCKTHLPHEDEILTLVDEDENEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTNPTEFKVYIIRTYNSADKEDTKEGSDATQLESSGKKNTKSSGHKSRANNSEDKGDNDENSEIFQLEKGGKRTTRSSRGKSRANKSEDKSDTGTDSNDPQFGKSGKRITRSSSKGVTSRYDDTDMNL* | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 341056 | 348568 | + | Chy1G000470.1 | Chy01g00047 | 217228 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy01g00047 | 352 | SMART | B3_2 | 148 | 239 | IPR003340 | GO:0003677 | |
Chy01g00047 | 352 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 | 22 | 242 | - | - | |
Chy01g00047 | 352 | MobiDBLite | consensus disorder prediction | 54 | 77 | - | - | |
Chy01g00047 | 352 | Pfam | B3 DNA binding domain | 148 | 237 | IPR003340 | GO:0003677 | |
Chy01g00047 | 352 | MobiDBLite | consensus disorder prediction | 320 | 352 | - | - | |
Chy01g00047 | 352 | MobiDBLite | consensus disorder prediction | 244 | 352 | - | - | |
Chy01g00047 | 352 | SUPERFAMILY | DNA-binding pseudobarrel domain | 141 | 237 | IPR015300 | - | |
Chy01g00047 | 352 | Coils | Coil | 19 | 46 | - | - | |
Chy01g00047 | 352 | MobiDBLite | consensus disorder prediction | 271 | 319 | - | - | |
Chy01g00047 | 352 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 22 | 242 | IPR044837 | - | |
Chy01g00047 | 352 | Gene3D | - | 123 | 240 | IPR015300 | - | |
Chy01g00047 | 352 | ProSiteProfiles | B3 DNA-binding domain profile. | 148 | 239 | IPR003340 | GO:0003677 | |
Chy01g00047 | 352 | CDD | B3_DNA | 146 | 237 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g00047 | Chy-Chr1:341056 | Chy03g01525 | Chy-Chr3:17505321 | 2.20E-80 | dispersed | |
Chy01g00047 | Chy-Chr1:341056 | Chy03g01523 | Chy-Chr3:17501677 | 2.00E-73 | wgd | |
Chy01g00047 | Chy-Chr1:341056 | Chy06g01091 | Chy-Chr6:9106154 | 2.36E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17236 | PF02362 | B3 | 3.40E-15 | CL0405 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy01g00047 | - | - | csv:101206354 | 603.594 |