Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00049 ATGACACTTCTCAATCCCATCTTCTTCTTCCTTTTCTTCTTCCTCCTCCGCTTCTCCATCGCTTCTCAACCCCTTCCTCGAGGGTATCTTCTCAATTGCGGTGCCACCGAATCTACCGCCAAGGTAACCGTCGGCAGCCTTCAGTACATCACAGACGAGGGATTTATCTCTGTTGGAAACACCACGAAGCTCCTTGATCCAAATCTGGTACCCATTCTCTCGACATTGCGTTATTTTCCTGACAAATCGGCTAGGAAATACTGCTACTCGATTCCGGTGGTTAAGGGAGGGAAATACATTGTGAGAACGACGTATTATTACGGTGGATACGACGGTGGGACGGTGCCGCCGATTTTCGACCAGATTGTGGAAGGGACGAAATGGAGCATAGTGAACACGACGGACGATTACGCCAACGGGATGTCGTCGTATTACGAGGTTGTGGTGGTGGCGATGGGGAAAATGATGAGCGTTTGTTTGGCGAGGAACCAACATACGGATTCGAGTTCCAGCCCTTTCATTTCGGCTCTGGAGTTGGAGTATTTGGAGGACTCTGTTTATAATACCACGGATTTCAAGAACCATGCTCTGAGCTTGGTTGCTAGAACCAGCTTTGGACATGACGTCGATGTCATTGGCTTTCCAGATGATGCATCCAACCGGCAATGGCACCCGTTTGTTGATGAGAACCCATTGGTAACATGCCATGCCAACGTTACTTCTTCGACCTTTTGGAATCTCCCACCAGCAAAGGCTTTTAACACTGCCTTGACAACCAGCCGTGGGAAGTCACTCAAAGTTAATTGGCCTCCGTTCTCACTTCCAGCAGCCTACTACTACGTCTCTCTGTACTTTCAGGACAATCGGTCTCCGAGTCCATATAGCTGGAGGGTCTTTAGCGTTGCAGTAAATGGCAAGAATTTCTTTACGAACCTCAATGTCACTGCTAATGGCGTGTCTGTTTACAGTGCGAAATGGCCTCTATCTGGACAGACCCACCTAGAACTAATTCCTGCAGATGGCGTGCCTGTTGGGCCTGTGATTAATGCTGCTGAGATCCTTCAAGTTTTTCGTCTCAGTGGAAGGACATTAACAAGAGATGTAATGGCAATGGAGGACTTGGCACGAAGCTTCAACAACCCGCCTCATGATTGGAGTGGTGATCCTTGCTTGCCTAAGGATAATTCGTGGACCGGAGTCACTTGTTCCGATGGAAAACTTGCTCGAGTTGTCAATTTAAACTTGACAAACTTTGGCTTATCTGGCGCACTTCCTTCAAGCATAAACAATTTAACTGCCCTCACTCATCTTTGGCTTGGTAGCAACAAACTCTCAGGCTTTATTCCAGAAATGGGTTCATTGAAGGAGTTACAAACACTGCATCTGGAGAAAAACCAATTTGAAGGGCCAATTCCTCGTTCACTCTCGAAGCTTCCACATATCCGCGAAATATTTCTCCAAAACAATGATCTGAAGTCAAAAGCTCTCGAAGTGCTGCAAAAGCGAGGCATACACGTCGAGCTGTTCTCCTTCAAGGACCGGCAGAGCTCTGGCCTCCGGCGGGCACTGCAGCCGAGCTCGGAGGAAATAAAGCAGATATTCAACAAGTTTGACACGAACAAAGACGGGAGGATCTCGAAGCATGAATACAGGGGAATTCTGAAGGCGTTGGGGAGAGGGAATTCAATGGAAGAAGTTCAGAAGATTTTCAGGGCGGTGGATTCCGACGGCGATGGGTATATAAATTTGAATGAGTTTATGGAGGTTCACCGGAGCGGTGGGGGAGTTCAGGCAAAAGAGGTGGAATTTGCCTTCAAGACGTTTGATTTGAATGGGGATCGGAAGATTAGTGCAGAGGAAGTGATGAGAGTGTTGAAGGGATTGGGGGAGAAGTGTAGCATTGAGGATTGCCGGCGAATGGTGAGGGCGGTGGATACCGACGGCGACGGCATGGTGGACATTAATGAGTTTGTGACCATGATGACTCGCTCTGCTAAGTGA 2001 48.18 MTLLNPIFFFLFFFLLRFSIASQPLPRGYLLNCGATESTAKVTVGSLQYITDEGFISVGNTTKLLDPNLVPILSTLRYFPDKSARKYCYSIPVVKGGKYIVRTTYYYGGYDGGTVPPIFDQIVEGTKWSIVNTTDDYANGMSSYYEVVVVAMGKMMSVCLARNQHTDSSSSPFISALELEYLEDSVYNTTDFKNHALSLVARTSFGHDVDVIGFPDDASNRQWHPFVDENPLVTCHANVTSSTFWNLPPAKAFNTALTTSRGKSLKVNWPPFSLPAAYYYVSLYFQDNRSPSPYSWRVFSVAVNGKNFFTNLNVTANGVSVYSAKWPLSGQTHLELIPADGVPVGPVINAAEILQVFRLSGRTLTRDVMAMEDLARSFNNPPHDWSGDPCLPKDNSWTGVTCSDGKLARVVNLNLTNFGLSGALPSSINNLTALTHLWLGSNKLSGFIPEMGSLKELQTLHLEKNQFEGPIPRSLSKLPHIREIFLQNNDLKSKALEVLQKRGIHVELFSFKDRQSSGLRRALQPSSEEIKQIFNKFDTNKDGRISKHEYRGILKALGRGNSMEEVQKIFRAVDSDGDGYINLNEFMEVHRSGGGVQAKEVEFAFKTFDLNGDRKISAEEVMRVLKGLGEKCSIEDCRRMVRAVDTDGDGMVDINEFVTMMTRSAK* 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 355459 361770 - Chy1G000490.1 Chy01g00049 217230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00049 666 Gene3D - 207 355 - -
Chy01g00049 666 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-KINASE-RELATED 7 503 - -
Chy01g00049 666 SUPERFAMILY L domain-like 370 499 - -
Chy01g00049 666 ProSiteProfiles EF-hand calcium-binding domain profile. 561 596 IPR002048 GO:0005509
Chy01g00049 666 PANTHER OS07G0107800 PROTEIN-RELATED 7 503 - -
Chy01g00049 666 ProSitePatterns EF-hand calcium-binding domain. 538 550 IPR018247 -
Chy01g00049 666 Pfam Malectin-like domain 31 356 IPR024788 -
Chy01g00049 666 ProSitePatterns EF-hand calcium-binding domain. 645 657 IPR018247 -
Chy01g00049 666 ProSiteProfiles EF-hand calcium-binding domain profile. 632 666 IPR002048 GO:0005509
Chy01g00049 666 ProSiteProfiles EF-hand calcium-binding domain profile. 599 631 IPR002048 GO:0005509
Chy01g00049 666 Gene3D - 596 666 - -
Chy01g00049 666 SUPERFAMILY EF-hand 528 662 IPR011992 -
Chy01g00049 666 SMART efh_1 565 593 IPR002048 GO:0005509
Chy01g00049 666 SMART efh_1 600 628 IPR002048 GO:0005509
Chy01g00049 666 SMART efh_1 636 664 IPR002048 GO:0005509
Chy01g00049 666 SMART efh_1 529 557 IPR002048 GO:0005509
Chy01g00049 666 CDD EFh 529 591 IPR002048 GO:0005509
Chy01g00049 666 CDD EFh 600 662 IPR002048 GO:0005509
Chy01g00049 666 Gene3D Ribonuclease Inhibitor 362 510 IPR032675 -
Chy01g00049 666 Gene3D - 511 593 - -
Chy01g00049 666 ProSitePatterns EF-hand calcium-binding domain. 574 586 IPR018247 -
Chy01g00049 666 ProSiteProfiles EF-hand calcium-binding domain profile. 525 560 IPR002048 GO:0005509
Chy01g00049 666 ProSitePatterns EF-hand calcium-binding domain. 609 621 IPR018247 -
Chy01g00049 666 Pfam EF-hand domain pair 528 588 IPR002048 GO:0005509
Chy01g00049 666 Pfam EF-hand domain pair 601 661 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00049 - - - csv:101206117 1011.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00049 Chy-Chr1:355459 Chy10g00814 Chy-Chr10:14115493 3.05E-50 dispersed
Chy12g00918 Chy-Chr12:14568362 Chy01g00049 Chy-Chr1:355459 1.25E-32 dispersed
Chy02g02315 Chy-Chr2:27171432 Chy01g00049 Chy-Chr1:355459 5.04E-26 transposed
Chy03g00371 Chy-Chr3:5137767 Chy01g00049 Chy-Chr1:355459 3.12E-07 transposed
Chy03g00747 Chy-Chr3:9952390 Chy01g00049 Chy-Chr1:355459 3.31E-17 transposed
Chy03g01223 Chy-Chr3:15330372 Chy01g00049 Chy-Chr1:355459 3.23E-10 transposed
Chy04g01599 Chy-Chr4:22447608 Chy01g00049 Chy-Chr1:355459 4.71E-07 transposed
Chy05g00227 Chy-Chr5:1890919 Chy01g00049 Chy-Chr1:355459 5.85E-143 transposed
Chy06g01300 Chy-Chr6:12156489 Chy01g00049 Chy-Chr1:355459 7.63E-10 transposed
Chy06g01323 Chy-Chr6:12496142 Chy01g00049 Chy-Chr1:355459 1.23E-07 transposed
Chy07g00678 Chy-Chr7:6544784 Chy01g00049 Chy-Chr1:355459 2.85E-06 transposed
Chy07g01448 Chy-Chr7:18935830 Chy01g00049 Chy-Chr1:355459 1.89E-06 transposed
Chy09g00496 Chy-Chr9:4814938 Chy01g00049 Chy-Chr1:355459 3.61E-06 transposed
Chy09g00827 Chy-Chr9:10974788 Chy01g00049 Chy-Chr1:355459 2.36E-07 transposed
Chy11g00175 Chy-Chr11:1694324 Chy01g00049 Chy-Chr1:355459 1.26E-08 transposed
Chy01g00049 Chy-Chr1:355459 Chy03g01538 Chy-Chr3:17574012 4.86E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g423 . . . . . . . . Cmo19g00627 Cmo11g01358 . . . . Sed05g3402 Cpe04g00276 Cpe15g00493 Bhi05g01126 Tan02g0902 Cmetu11g1775 . Hepe02g0581 . . Cla02g00595 Cam02g0624 Cec02g0624 Cco02g0639 Clacu02g0628 Cmu02g0624 Cre02g0948 Cone11ag0284 . . . . Csa07g00766 . Cme01g00043 . . . . . . . . . Cmo02g00564 . . Cma19g00609 Car11g01088 . . . . . . . . . . . . . . . . . . . Chy01g00049 Cme11g00303
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009605 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00049 Chy_Chr01 FPKM 0.0 0.0 0.0 0.0 0.400759 0.0 0.224988 0.0 0.0 0.0