Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00050 ATGCTCATGGCCTCCGATCACCCCCCCTTCTCCCCCGCCTTCCGCCGCATCACCGAAGAACAAGAACTCTCTGTCATCGTCGACGCTCTCACCCAAGTCGTTTCCGGCGCCGCCTCCTCCGCCCTCTCATTCCACCCCGACCATTTCCTCCGCGTCCTCTTCCCTCCTATTAATCCCACTACTGCTCCCTTCTCCTCCTCTTCAGAATTTGACACATGTCCTCTCTGTAAAATCAACGGTTGCTTAGGCTGCCACTTCTTCTCCGCCCCCGCCCCCGCCTCTACCACTACCACTACCACTACTACTACCGCCGCCGCCGCCAACAACAACAACAATTCCGGGCGCCGCGTGAAGCGTTTGAAGAAGAATTATAGAGGCGTCCGACAACGCCCTTGGGGGAAATGGGCGGCTGAAATCCGTGACCCAATACGTGCGGCACGTGTCTGGCTTGGTACATTCAATACCGCTGAAGATGCCGCACGTGCTTACGATGAAGCTGCTATTAAATTCCGTGGCCCACGTGCCAAACTTAATTTCCCCTTCCCTGATCATTCCTTATCCACCTTCCATTCTTCTCCCCCTCCGGCTTCCACCACCACCTCCGCCTCCGCCTCCTACACCCCTGCCGCACCACCCCCACCAGTCCTTCCAAGGAGTACTACTACCTCCTCATCCATGAAATTCGAGATCACTACTAACAACATTCTATTTCCAGAGATTTTCAACAACGACGAAGATGGCGACGTTCAAAGATATCTCTTCGATTATGATAATCAATCAAGAAGCTTGTAA 792 53.91 MLMASDHPPFSPAFRRITEEQELSVIVDALTQVVSGAASSALSFHPDHFLRVLFPPINPTTAPFSSSSEFDTCPLCKINGCLGCHFFSAPAPASTTTTTTTTTAAAANNNNNSGRRVKRLKKNYRGVRQRPWGKWAAEIRDPIRAARVWLGTFNTAEDAARAYDEAAIKFRGPRAKLNFPFPDHSLSTFHSSPPPASTTTSASASYTPAAPPPPVLPRSTTTSSSMKFEITTNNILFPEIFNNDEDGDVQRYLFDYDNQSRSL* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 366046 366837 - Chy1G000500.1 Chy01g00050 217231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00050 263 CDD AP2 122 180 IPR001471 GO:0003700|GO:0006355
Chy01g00050 263 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Chy01g00050 263 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Chy01g00050 263 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 203 - -
Chy01g00050 263 MobiDBLite consensus disorder prediction 188 206 - -
Chy01g00050 263 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Chy01g00050 263 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Chy01g00050 263 MobiDBLite consensus disorder prediction 188 223 - -
Chy01g00050 263 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Chy01g00050 263 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Chy01g00050 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 15 203 - -
Chy01g00050 263 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00050 - - - csv:101219627 388.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00050 Chy-Chr1:366046 Chy02g01009 Chy-Chr2:6807260 1.54E-30 dispersed
Chy03g00270 Chy-Chr3:2789918 Chy01g00050 Chy-Chr1:366046 3.37E-30 dispersed
Chy03g00496 Chy-Chr3:6863400 Chy01g00050 Chy-Chr1:366046 3.61E-29 dispersed
Chy11g00085 Chy-Chr11:961934 Chy01g00050 Chy-Chr1:366046 3.71E-27 dispersed
Chy11g01833 Chy-Chr11:24696536 Chy01g00050 Chy-Chr1:366046 8.02E-29 dispersed
Chy07g01550 Chy-Chr7:19739769 Chy01g00050 Chy-Chr1:366046 9.94E-24 transposed
Chy01g00050 Chy-Chr1:366046 Chy02g00914 Chy-Chr2:5974652 1.07E-17 wgd
Chy01g00050 Chy-Chr1:366046 Chy06g01086 Chy-Chr6:9038093 1.48E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g418 . . . . . Bpe12g00058 . . Cmo19g00624 Cmo11g01359 . . . . Sed04g1638 . . Bhi05g01124 Tan02g0906 Cmetu06g0968 . Hepe02g0583 . . Cla02g00597 Cam02g0626 Cec02g0626 Cco02g0641 Clacu02g0630 Cmu02g0626 Cre02g0950 Cone6ag1392 . . . . Csa07g00764 . . Blo04g00488 Blo13g00573 . Bda14g00518 Bpe15g00897 . Bma03g00518 Bma08g00799 . . . Cma11g01754 Cma19g00606 . Car19g00460 . . . . . . . . . . . . . . . . . . Chy01g00050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000711 2 2 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 7 2 3 3 5 3 3 2 3 3 4 3 2 97
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17237 PF00847 AP2 3.40E-15 CL0081 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00050 Chy_Chr01 FPKM 0.0 0.0 0.774329 0.349209 13.01002 12.33058 13.174062 0.148179 0.292767 0.0