Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00056 ATGGGTATCTTTTCAAAGCAAAAAATCTGGAGAGCAGGAACGACCCATGATGATTCGATGGGGTTTAATGGGGTTTCTGCAGCGAGCAAGAGGAAATGGACCCGTTTTTTGCCTTTGTTTGTGGCCATTGTGGTTATAGCAGAGATCGCTTCTCTGAGTCGGCTAGATATGGCGAAAAATGCGGCTATGGTGGATTCTTGGGTCGACTTGTTCTATGGATCTCCGGTTTTGCAAGAAGGGAATGAAGGTGGTAGTAAAACGGGCACTGAAATTTCTATTGATGATGGAGGGATTGATGGAATTAGCTGTGAGGAGTGGCTGGAGAAGGAGGATGCCGTGGAGTATTCTAGGGACTTCAAAAGGGAACCTGTTTTGGTTTCTGGCTCCGAGAAGGAGTGGAGAACTTGTGATGTGGGATGCCAATTTGGATTTAATCCTGGACAGCAGCCTGATGCTATATTCGGATCACCTAATCAAGGTAGTGTTGCTAGTGTACTTCGATCCATGGAATCATCACATTACTATCCTGAGAACAATATTGATTTGGCAAGACGGAAGGGTTATACCGTGGTTATGACCACTAGTCTATCATCAGATGTCCCTGTTGGATATTTTTCATGGGCAGAATACGAGATAATGGCACCAGTGCAGCCAAAGACCGAGCCTGCTCTTGCAGCTGCCTTCATTTCAAATTGTGGTGCTCGCAACTTCCGTTTGCAAGCTCTTGATGCGCTTGAGAAGTTGAATGTCAAAATTGATTCGTATGGTAGCTGCCACCGGAACCACGATGGAAGAGTTGACAAAGTGGAAACATTGAAGCGCTACAAGTTCAGCTTGGCATTTGAGAATTCCAATGAAGAAGATTATGTCACGGAGAAATTTTTTCAATCTCTTGTTGCAGGAACTATTCCGGTGGTGGTTGGTGCTCCAAACATCAAGGAGTTTGCTCCTTCTCCTGATTCATTTTTGCATATCAAGGAGTTTTCTGATGTTGAGTCGATTGCCAAGTCCATGAAATACCTTGCTAAAAATCCCCAAATATACAATCAATCGCTAAGATGGAAGTACGACGGTCCATCCGAGTCTTTCAAGGCCCTTGTTGATATGGCAGCAGTGCACTCATCCTGCCGCCTTTGCATCCATATGGCAACCATCATCCACGAGAAAGAAGAAAACAGTCCCAGGTTTTTCTTAGGGGAAACGAAATCATTCGGCGTCGACAATGACAGGTCAGGAAATTTGACGCTGGAGGCTTTAGAATCAACGGTGCTAAAAAAGTTCAATTCTTTGAAACACGTACCAATCTGGAAGCAAGAAAGGCCTGAAAGCATAAGAGGAGGAGATGAACTAAAACTATACAGAATATATCCTGTTGGGTTGACTCAAAGGCAGGCTTTATACACCTTCAGATTCAAAGGCAGTGATGATTTCAGAACTCACATAGAAACACACCCTTGTGCAAAGATGGAAATCATATTTGTCTGA 1485 43.97 MGIFSKQKIWRAGTTHDDSMGFNGVSAASKRKWTRFLPLFVAIVVIAEIASLSRLDMAKNAAMVDSWVDLFYGSPVLQEGNEGGSKTGTEISIDDGGIDGISCEEWLEKEDAVEYSRDFKREPVLVSGSEKEWRTCDVGCQFGFNPGQQPDAIFGSPNQGSVASVLRSMESSHYYPENNIDLARRKGYTVVMTTSLSSDVPVGYFSWAEYEIMAPVQPKTEPALAAAFISNCGARNFRLQALDALEKLNVKIDSYGSCHRNHDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIKEFAPSPDSFLHIKEFSDVESIAKSMKYLAKNPQIYNQSLRWKYDGPSESFKALVDMAAVHSSCRLCIHMATIIHEKEENSPRFFLGETKSFGVDNDRSGNLTLEALESTVLKKFNSLKHVPIWKQERPESIRGGDELKLYRIYPVGLTQRQALYTFRFKGSDDFRTHIETHPCAKMEIIFV* 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 419901 425005 - Chy1G000560.1 Chy01g00056 217237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00056 494 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 223 384 IPR001503 GO:0006486|GO:0008417|GO:0016020
Chy01g00056 494 Gene3D - 169 362 IPR038577 -
Chy01g00056 494 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 40 472 IPR001503 GO:0006486|GO:0008417|GO:0016020
Chy01g00056 494 PANTHER GLYCOPROTEIN 3-ALPHA-L-FUCOSYLTRANSFERASE A-LIKE ISOFORM X1 40 472 - -
Chy01g00056 494 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 128 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00056 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101205170 948.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00056 Chy-Chr1:419901 Chy06g01079 Chy-Chr6:8913819 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g01025 . 35 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.2e-154 543.5
Chy12g01529 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 55.4 8.5e-153 537.3
Chy10g01025 . 92 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.5 1.9e-162 569.3
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 5.7e-162 567.8
Chy10g01025 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 4.4e-137 485.0
Chy12g01529 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 1.3e-133 473.4
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 61.8 2.2e-182 635.6
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT1G49710 58.8 2.5e-170 595.5
Chy10g01025 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.2e-183 639.0
Chy12g01529 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.7 8.1e-170 594.0
Chy10g01025 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 3.3e-200 694.9
Chy12g01529 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.1 5.3e-190 661.0
Chy07g01059 . 13 508 Xyloglucan Fucosyltransferase1 AT2G03220 50.6 1.9e-147 519.6
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 4.8e-153 538.1
Chy12g01529 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.0 8.7e-147 517.3
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.3 5.9e-146 514.6
Chy12g01529 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 1.8e-142 503.1
Chy10g01025 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 52.8 1.1e-147 520.4
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 3.8e-145 511.9
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 3.5e-185 644.8
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT3G19280 58.0 7.4e-167 583.9
Chy10g01025 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.2e-183 639.0
Chy12g01529 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.7 8.1e-170 594.0
Chy10g01025 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 3.3e-200 694.9
Chy12g01529 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.1 5.3e-190 661.0
Chy07g01059 . 13 508 Xyloglucan Fucosyltransferase1 AT2G03220 50.6 1.9e-147 519.6
Chy10g01025 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.2e-183 639.0
Chy12g01529 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.7 8.1e-170 594.0
Chy10g01025 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 52.8 1.1e-147 520.4
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 3.8e-145 511.9
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.3 5.9e-146 514.6
Chy12g01529 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 1.8e-142 503.1
Chy10g01025 . 35 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.2e-154 543.5
Chy12g01529 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 55.4 8.5e-153 537.3
Chy10g01025 . 92 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.5 1.9e-162 569.3
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 5.7e-162 567.8
Chy10g01025 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 4.4e-137 485.0
Chy12g01529 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 1.3e-133 473.4
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 4.8e-153 538.1
Chy12g01529 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.0 8.7e-147 517.3
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 3.5e-185 644.8
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT3G19280 58.0 7.4e-167 583.9
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 61.8 2.2e-182 635.6
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT1G49710 58.8 2.5e-170 595.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00056 Chy_Chr01 FPKM 22.378046 24.540867 13.23166 13.210778 17.697704 16.266134 18.130987 16.003786 14.637949 17.799807