Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00057 ATGGGTGACTCTCATACGCCGTCGTTTCTCTCACCGCGGCTTGCAGATCGACAATTACCCATGCCGCTGGCCTCTGCTACTATCGACTCCACTGGCTTCAACTCGGAATCTCACTCTTCTTCCATTACTGTTGACGGGTCCAAGCATTTTTTCGATTCTCATCATTGTTTGCAACTGGATGCGGAGCAAACACATTGGACAGACGAGAAACATAGATTATATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGGTTTGCATCAACATAGGCGTATGCATGCTTTATCCCCAAAACAGAAGATGCGTCGGAAGCCGATCATGCCTGATATATCTTCTTCAGAGTTGATGGTCCTTCAAGATGCCTCTTGGCAGAAGGCTCACATTGGGAGGAATGATCCTTTATTGGATAAGACTGCTGATTCTCCTGCTATTTTAGAGGATCTATGGATAAATCATTTTCCTTCTGCAGGAAAACAGTGTAGTTTGGAAACTCCTGATCTCCTTGAAGAATATGAAAGTTGTAGTGATAGGAGACACATAAGATACATGACGAACTCCTGTGGATCTGCCAGAAATTTTCAGCCGACCCGTCCATGCTGTTGTAATTCTTATACAATCATTACAGAAGTTTCAGATCAAAACTTTGTGGATAATCAACCAGAAGAGTTGTCTGGTGGCATGCCTATTGCAAAAAGATTAAAGAAAGCTTCTTCTGATTTTTCAGACAGTGGCCAGAAGAGCATTGTAAAGAAAGTAAGGAAAGTGACAACAATAATTTTACCAGAAGATCTGCGGCAGTAA 801 42.07 MGDSHTPSFLSPRLADRQLPMPLASATIDSTGFNSESHSSSITVDGSKHFFDSHHCLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRMHALSPKQKMRRKPIMPDISSSELMVLQDASWQKAHIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEEYESCSDRRHIRYMTNSCGSARNFQPTRPCCCNSYTIITEVSDQNFVDNQPEELSGGMPIAKRLKKASSDFSDSGQKSIVKKVRKVTTIILPEDLRQ* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 427155 430294 - Chy1G000570.1 Chy01g00057 217238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00057 266 PANTHER REGULATED GENE 27, PUTATIVE ISOFORM 2-RELATED 25 253 - -
Chy01g00057 266 PANTHER COLD REGULATED PROTEIN 27 25 253 IPR044678 GO:0009409|GO:0042752
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00057 - - - csv:101204925 471.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00057 Chy-Chr1:427155 Chy07g00132 Chy-Chr7:1129822 5.75E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g407 . . . . . . . . Cmo19g00619 . . . . . . Cpe04g00282 Cpe15g00485 Bhi05g01066 . . . . . . Cla02g00603 Cam02g0632 Cec02g0632 Cco02g0651 Clacu02g0636 Cmu02g0632 Cre02g0956 . . . . . . . Cme01g00053 . . . . . . . . . . . Cma11g01747 Cma19g00601 . Car19g00454 . . . . . . . . . . . . . . . . . . Chy01g00057 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006108 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00057 Chy_Chr01 FPKM 8.236363 8.742086 24.16523 22.723698 60.009499 63.806538 58.924934 8.970779 9.740788 10.317424