Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy01g00064 | ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGCGCCGATCCGGCTGCCAATGGAGGGGCAAATCAGCATGTCACCACCTCCCTCTATGTTGGAGATCTTGACGTTAACGTCACCGATTCCCAGCTTTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTAACCAGTCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTAGATGTGCTAAACTTCACCCCTTTGAATGGAAATCCTATTAGAGTCATGTATTCTCATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAACATATTTATCAAGAACTTGGACAAAGCAATTGATCACAAAGCGTTGCATGATACTTTCTCTGCATTTGGAAGCATTCTATCATGCAAGGTTGCTACAGATTCATCTGGCCAGTCTAAGGGCTTTGGTTTTGTGCAATTTGACACCGAGGAGGCTGCCTTAAAAGCCATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTCAATAACGTTTTTGTCAAGAATCTCGCAGAAACTACCTTTGAAGAAGATTTGAAGAATATGTTTGGGGAGTTCGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTAAATTTTGAGAATGCGGATGATGCTGCTAGATCTGTTGAAGCACTTAATGGAAATAAGGTTGATGGAAAAGAGTGGTACGTTGGGAAAGCCCAGAAGAAATCTGAAAGAGAAGTTGAACTGAAAAATCGATTTGAACAGAGTGTAAAAGAAGCCGCTGACAAGTATCAAGGGGCAAACTTATATGTTAAGAATTTAGATGATAGCATCGATGATGACAAACTAAAGGAGTTATTCACTGGTTTTGGAACCATTACCTCATGCAAGGTTATGCGTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTCTCTTCTCCAGAAGAGGCTGCAAGAGCTCTTGCTGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGGGCTAGGTTGCAAGCACAGTTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTCTATGGACAAGCTCCACCTACTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCGATGGTACAGCAGGGCCAGCAAGGGCAAAGATCAGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCTGTTCCTTTGATGCAGCAGCAGATGCTACCTAGAGGACGAGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCCGGTGTTGCTGGAGGAATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCACGTGATGCTGTTCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCAACTCCAGACCAGCAGAGAACGGTAGGTTCTAAGATCAAATCTGTCATCAAGTTCTCTTTAATTTTAGATAGTGACACTTTAATGGGGTGTACGCAAAGCATTTTGCTCTTGTTACCTGTCTTTCTGTTTGTGTTCTATTATACAGTCATGACTGCCTGTTTTGTTGTTCTTCAGATGCTGGGGGAGAACCTTTATCCACTTGTTGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTACATTTGCTTGAGTCACCTGAAGCTCTGAAAGCGAAGGTGGCGGAAGCAATGGAGGTTTTAAGAAGTGTCGCTCAGCAGTCTGGCAATGCAGCTGATCAATTGGCTTCACTATCCTTGACTGACAATCTTGATTCCTAA | 2103 | 45.32 | MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTFEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGNKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTVGSKIKSVIKFSLILDSDTLMGCTQSILLLLPVFLFVFYYTVMTACFVVLQMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQSGNAADQLASLSLTDNLDS* | 701 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 474595 | 477987 | - | Chy1G000640.1 | Chy01g00064 | 217245 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy01g00064 | 700 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 198 | IPR035979 | GO:0003676 | |
Chy01g00064 | 700 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 189 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | Pfam | Poly-adenylate binding protein, unique domain | 620 | 675 | IPR002004 | GO:0003723 | |
Chy01g00064 | 700 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 603 | 680 | IPR002004 | GO:0003723 | |
Chy01g00064 | 700 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Chy01g00064 | 700 | SMART | rrm2_1 | 209 | 281 | IPR003954 | GO:0003676 | |
Chy01g00064 | 700 | SMART | rrm2_1 | 312 | 384 | IPR003954 | GO:0003676 | |
Chy01g00064 | 700 | SMART | rrm2_1 | 118 | 190 | IPR003954 | GO:0003676 | |
Chy01g00064 | 700 | SMART | rrm2_1 | 30 | 103 | IPR003954 | GO:0003676 | |
Chy01g00064 | 700 | CDD | RRM4_I_PABPs | 310 | 388 | - | - | |
Chy01g00064 | 700 | CDD | RRM2_I_PABPs | 115 | 191 | IPR045305 | - | |
Chy01g00064 | 700 | Gene3D | - | 111 | 197 | IPR012677 | - | |
Chy01g00064 | 700 | Gene3D | - | 5 | 110 | IPR012677 | - | |
Chy01g00064 | 700 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 311 | 388 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 391 | IPR035979 | GO:0003676 | |
Chy01g00064 | 700 | PANTHER | RNA BINDING PROTEIN | 621 | 685 | - | - | |
Chy01g00064 | 700 | PANTHER | RNA BINDING PROTEIN | 18 | 571 | - | - | |
Chy01g00064 | 700 | CDD | RRM1_I_PABPs | 30 | 109 | - | - | |
Chy01g00064 | 700 | Gene3D | - | 619 | 682 | - | - | |
Chy01g00064 | 700 | SUPERFAMILY | PABC (PABP) domain | 621 | 690 | IPR036053 | GO:0003723 | |
Chy01g00064 | 700 | Gene3D | - | 293 | 400 | IPR012677 | - | |
Chy01g00064 | 700 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 18 | 571 | - | - | |
Chy01g00064 | 700 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 621 | 685 | - | - | |
Chy01g00064 | 700 | CDD | RRM3_I_PABPs | 207 | 286 | - | - | |
Chy01g00064 | 700 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 30 | 571 | IPR006515 | GO:0003723 | |
Chy01g00064 | 700 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 285 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | SMART | rrm1_1 | 209 | 281 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | SMART | rrm1_1 | 312 | 384 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | SMART | rrm1_1 | 118 | 190 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | Gene3D | - | 198 | 292 | IPR012677 | - | |
Chy01g00064 | 700 | SMART | poly_2 | 615 | 678 | IPR002004 | GO:0003723 | |
Chy01g00064 | 700 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 31 | 101 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 210 | 278 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 313 | 381 | IPR000504 | GO:0003723 | |
Chy01g00064 | 700 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 186 | IPR000504 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g00064 | Chy-Chr1:474595 | Chy04g02001 | Chy-Chr4:25802223 | 4.07E-09 | dispersed | |
Chy02g01015 | Chy-Chr2:6848660 | Chy01g00064 | Chy-Chr1:474595 | 2.93E-13 | dispersed | |
Chy03g00475 | Chy-Chr3:6640587 | Chy01g00064 | Chy-Chr1:474595 | 0 | transposed | |
Chy04g01204 | Chy-Chr4:18464707 | Chy01g00064 | Chy-Chr1:474595 | 7.43E-08 | transposed | |
Chy04g01806 | Chy-Chr4:24322278 | Chy01g00064 | Chy-Chr1:474595 | 2.79E-09 | transposed | |
Chy05g00217 | Chy-Chr5:1815985 | Chy01g00064 | Chy-Chr1:474595 | 3.86E-06 | transposed | |
Chy06g00060 | Chy-Chr6:414777 | Chy01g00064 | Chy-Chr1:474595 | 9.81E-12 | transposed | |
Chy06g00338 | Chy-Chr6:2245198 | Chy01g00064 | Chy-Chr1:474595 | 1.49E-08 | transposed | |
Chy06g00827 | Chy-Chr6:5834511 | Chy01g00064 | Chy-Chr1:474595 | 4.03E-23 | transposed | |
Chy11g01926 | Chy-Chr11:25379736 | Chy01g00064 | Chy-Chr1:474595 | 3.02E-11 | transposed | |
Chy01g00064 | Chy-Chr1:474595 | Chy06g01071 | Chy-Chr6:8732649 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy01g00064 | K13126 | - | csv:101223017 | 1174.46 |