Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00064 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGCGCCGATCCGGCTGCCAATGGAGGGGCAAATCAGCATGTCACCACCTCCCTCTATGTTGGAGATCTTGACGTTAACGTCACCGATTCCCAGCTTTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTAACCAGTCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTAGATGTGCTAAACTTCACCCCTTTGAATGGAAATCCTATTAGAGTCATGTATTCTCATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAACATATTTATCAAGAACTTGGACAAAGCAATTGATCACAAAGCGTTGCATGATACTTTCTCTGCATTTGGAAGCATTCTATCATGCAAGGTTGCTACAGATTCATCTGGCCAGTCTAAGGGCTTTGGTTTTGTGCAATTTGACACCGAGGAGGCTGCCTTAAAAGCCATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTCAATAACGTTTTTGTCAAGAATCTCGCAGAAACTACCTTTGAAGAAGATTTGAAGAATATGTTTGGGGAGTTCGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTAAATTTTGAGAATGCGGATGATGCTGCTAGATCTGTTGAAGCACTTAATGGAAATAAGGTTGATGGAAAAGAGTGGTACGTTGGGAAAGCCCAGAAGAAATCTGAAAGAGAAGTTGAACTGAAAAATCGATTTGAACAGAGTGTAAAAGAAGCCGCTGACAAGTATCAAGGGGCAAACTTATATGTTAAGAATTTAGATGATAGCATCGATGATGACAAACTAAAGGAGTTATTCACTGGTTTTGGAACCATTACCTCATGCAAGGTTATGCGTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTCTCTTCTCCAGAAGAGGCTGCAAGAGCTCTTGCTGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGGGCTAGGTTGCAAGCACAGTTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTCTATGGACAAGCTCCACCTACTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCGATGGTACAGCAGGGCCAGCAAGGGCAAAGATCAGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCTGTTCCTTTGATGCAGCAGCAGATGCTACCTAGAGGACGAGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCCGGTGTTGCTGGAGGAATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCACGTGATGCTGTTCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCAACTCCAGACCAGCAGAGAACGGTAGGTTCTAAGATCAAATCTGTCATCAAGTTCTCTTTAATTTTAGATAGTGACACTTTAATGGGGTGTACGCAAAGCATTTTGCTCTTGTTACCTGTCTTTCTGTTTGTGTTCTATTATACAGTCATGACTGCCTGTTTTGTTGTTCTTCAGATGCTGGGGGAGAACCTTTATCCACTTGTTGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTACATTTGCTTGAGTCACCTGAAGCTCTGAAAGCGAAGGTGGCGGAAGCAATGGAGGTTTTAAGAAGTGTCGCTCAGCAGTCTGGCAATGCAGCTGATCAATTGGCTTCACTATCCTTGACTGACAATCTTGATTCCTAA 2103 45.32 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTFEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGNKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTVGSKIKSVIKFSLILDSDTLMGCTQSILLLLPVFLFVFYYTVMTACFVVLQMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQSGNAADQLASLSLTDNLDS* 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 474595 477987 - Chy1G000640.1 Chy01g00064 217245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00064 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Chy01g00064 700 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Chy01g00064 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Chy01g00064 700 Pfam Poly-adenylate binding protein, unique domain 620 675 IPR002004 GO:0003723
Chy01g00064 700 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 603 680 IPR002004 GO:0003723
Chy01g00064 700 MobiDBLite consensus disorder prediction 1 23 - -
Chy01g00064 700 SMART rrm2_1 209 281 IPR003954 GO:0003676
Chy01g00064 700 SMART rrm2_1 312 384 IPR003954 GO:0003676
Chy01g00064 700 SMART rrm2_1 118 190 IPR003954 GO:0003676
Chy01g00064 700 SMART rrm2_1 30 103 IPR003954 GO:0003676
Chy01g00064 700 CDD RRM4_I_PABPs 310 388 - -
Chy01g00064 700 CDD RRM2_I_PABPs 115 191 IPR045305 -
Chy01g00064 700 Gene3D - 111 197 IPR012677 -
Chy01g00064 700 Gene3D - 5 110 IPR012677 -
Chy01g00064 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Chy01g00064 700 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Chy01g00064 700 PANTHER RNA BINDING PROTEIN 621 685 - -
Chy01g00064 700 PANTHER RNA BINDING PROTEIN 18 571 - -
Chy01g00064 700 CDD RRM1_I_PABPs 30 109 - -
Chy01g00064 700 Gene3D - 619 682 - -
Chy01g00064 700 SUPERFAMILY PABC (PABP) domain 621 690 IPR036053 GO:0003723
Chy01g00064 700 Gene3D - 293 400 IPR012677 -
Chy01g00064 700 PANTHER POLYADENYLATE-BINDING PROTEIN 18 571 - -
Chy01g00064 700 PANTHER POLYADENYLATE-BINDING PROTEIN 621 685 - -
Chy01g00064 700 CDD RRM3_I_PABPs 207 286 - -
Chy01g00064 700 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 571 IPR006515 GO:0003723
Chy01g00064 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Chy01g00064 700 SMART rrm1_1 209 281 IPR000504 GO:0003723
Chy01g00064 700 SMART rrm1_1 30 103 IPR000504 GO:0003723
Chy01g00064 700 SMART rrm1_1 312 384 IPR000504 GO:0003723
Chy01g00064 700 SMART rrm1_1 118 190 IPR000504 GO:0003723
Chy01g00064 700 Gene3D - 198 292 IPR012677 -
Chy01g00064 700 SMART poly_2 615 678 IPR002004 GO:0003723
Chy01g00064 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Chy01g00064 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Chy01g00064 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Chy01g00064 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00064 Chy-Chr1:474595 Chy04g02001 Chy-Chr4:25802223 4.07E-09 dispersed
Chy02g01015 Chy-Chr2:6848660 Chy01g00064 Chy-Chr1:474595 2.93E-13 dispersed
Chy03g00475 Chy-Chr3:6640587 Chy01g00064 Chy-Chr1:474595 0 transposed
Chy04g01204 Chy-Chr4:18464707 Chy01g00064 Chy-Chr1:474595 7.43E-08 transposed
Chy04g01806 Chy-Chr4:24322278 Chy01g00064 Chy-Chr1:474595 2.79E-09 transposed
Chy05g00217 Chy-Chr5:1815985 Chy01g00064 Chy-Chr1:474595 3.86E-06 transposed
Chy06g00060 Chy-Chr6:414777 Chy01g00064 Chy-Chr1:474595 9.81E-12 transposed
Chy06g00338 Chy-Chr6:2245198 Chy01g00064 Chy-Chr1:474595 1.49E-08 transposed
Chy06g00827 Chy-Chr6:5834511 Chy01g00064 Chy-Chr1:474595 4.03E-23 transposed
Chy11g01926 Chy-Chr11:25379736 Chy01g00064 Chy-Chr1:474595 3.02E-11 transposed
Chy01g00064 Chy-Chr1:474595 Chy06g01071 Chy-Chr6:8732649 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00064 K13126 - csv:101223017 1174.46