Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00077 ATGTCTTCTCAATCTATCATCAAAAAAGCAAGTTCAAACTTAGTGGAGCTTGACCCGCAAAATAAATTAAAGACGTGGAAAGGGCCAGATGTTTGCAAATACGAAGGGATTGGCTGTGATAAAGTTCCGGATTACAAAACCATAGCAGCGTCGGGAGTAAGCATCAACGGCTACGGATGGAGTGGTTCTAAGCTGACTCTAAATGGGTTCATCGACCAGTTGCCGGATATCGCTTACTTCCATGCAAACTCCAACAACTTCTCCGGCACCATCCCTGAACTTATCTCTGATCTCAGATTCTTCTACGAGCTTGACCTTAGCAACAACAAATTCTCCGGCGACTTTCCAAAGCAAGTTCTAGGCGCTACAAAACTCACGTTCTTGGATATAAGGTTCAACACTTTCTGCGGTCCAGTGCCGGGGAAACTATTTGATATGGACATTATCACGGCTATCTTCCTCAATAACAACAAGTTTAACAACTACATTCCACCTAACCTCGGCAACACCCCTGCTAGGTACCTAACGTTCACAAGCAACGAGTTCACCGGCCCCATCCCAAAAAGCATAGGAATCGGAAAAACAAAGAAGAACCTAATCGAAGTCCTGTTCTCCGACAACAAGCTCTCCGGCTGTTTACCGATGGAGATCGGTCTCTTAGAGAACACCATTCTCTTCGACGCAAGTAAAAACTCTCTCACCGGCCCAATCCCATATTCCTTTTCTTGCTTAGCCAAAATGCAGGTTCTCAATTTCGCGAACAACGCCTTATACGGCGCCGTGCCGGAGGGTGTGTGCAAGTTACCAGACATCCAACAATTGACCCTCCGCAACAACTTCATCACCCAAGTCGGCCCCATCTGCCGGAGCTTGATCTGGAAGAAAGTTCTAGACGTTTCGGGAAACTGCATTTTGGGTCTGCCGGAACAGAAATCGGAAGAGGAATGTACTCATTTCTTCACTCATGTTGAGCTGTGTCCTGATGAGAAGTCAATGAAGTACATTCCTTGTAAACAGAATTGGTATTTGAATGAAGATCCCGCCGCCGTACTCCGTCGGCCGGCCAGGAAAGTGACGGAGATGAGAACTTACGCAGCTCTTTCCCCAGTACATTAA 1116 46.59 MSSQSIIKKASSNLVELDPQNKLKTWKGPDVCKYEGIGCDKVPDYKTIAASGVSINGYGWSGSKLTLNGFIDQLPDIAYFHANSNNFSGTIPELISDLRFFYELDLSNNKFSGDFPKQVLGATKLTFLDIRFNTFCGPVPGKLFDMDIITAIFLNNNKFNNYIPPNLGNTPARYLTFTSNEFTGPIPKSIGIGKTKKNLIEVLFSDNKLSGCLPMEIGLLENTILFDASKNSLTGPIPYSFSCLAKMQVLNFANNALYGAVPEGVCKLPDIQQLTLRNNFITQVGPICRSLIWKKVLDVSGNCILGLPEQKSEEECTHFFTHVELCPDEKSMKYIPCKQNWYLNEDPAAVLRRPARKVTEMRTYAALSPVH* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 517189 522986 - Chy1G000770.1 Chy01g00077 217258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00077 371 Gene3D Ribonuclease Inhibitor 173 325 IPR032675 -
Chy01g00077 371 Gene3D Ribonuclease Inhibitor 4 172 IPR032675 -
Chy01g00077 371 PANTHER BNAC05G26270D PROTEIN 12 369 - -
Chy01g00077 371 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 12 369 - -
Chy01g00077 371 SUPERFAMILY L domain-like 52 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00077 - - - csv:101217962 712.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00077 Chy-Chr1:517189 Chy06g01066 Chy-Chr6:8684829 7.19E-101 dispersed
Chy01g00077 Chy-Chr1:517189 Chy01g00078 Chy-Chr1:523037 1.16E-180 tandem
Chy01g00077 Chy-Chr1:517189 Chy03g01561 Chy-Chr3:17767735 6.09E-112 wgd
Chy01g00077 Chy-Chr1:517189 Chy06g01063 Chy-Chr6:8627672 2.21E-126 wgd
Chy01g00077 Chy-Chr1:517189 Chy07g00149 Chy-Chr7:1279545 1.01E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00077 Chy_Chr01 FPKM 14.810266 14.520754 14.842991 14.458323 14.723269 14.136729 13.887894 17.19455 15.924763 17.040133