Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00080 ATGGATCCAAATTCTACCGATTCCCCAATATCATCTACTGTTAATTCCTCGGAAACTAAACCACCAGAAGTACACCCTCAGGCTCCTGTTACCACTGGAACGAATAATGTAGCCCGTGATGCACCATCTAAGTTATCTCCTAGTGGCATAACCTCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAGCGACTGAAAATGCTGGGAAGTCAGCTTTTGCACGTTTCACTAGTGGCTTGGGTTTGAACTTATCTCCAAAATCTCCTGCACCCAGTGATTCCCCAGATGGAAATTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGCCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACCGGAACCATATGGAAGAAGTCATAAAGTTTTTTGAAACACATCACAAGGGAAAATACAAAGTATATAATCTGTGTTCTGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCACAACTGTCCCCCAGTTCAACTCATAATATCCTTTTGCCAAAGTGCCTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTTTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGATATTACCTAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGGTGCGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCGTATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAGTGCATCCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTCGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCATGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACTGAAAATCGAAAAATGCTGTACACAAACGATCTTGATGGGTTCGATAAGAGGAAACTACCTTCCCCTGGGTTTCAGGTGGAGGTTGTTCTAGTAGATACATCGCCCAACATGGACAACACTACCAAAAAGTCGGATGAAAGCTCAGGCTCCAAGCCTCCTGCAGCTGATGGGAGTGAAGTTTCTGAAAACCAAAACAGAAAATCAGGAACTAATGATAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCAACTTCAGGTTCAGGGGTTGAAGGATCAGCTGTCCATACGACGACTAAATCTCAAACGAGTATGACTTCATCAGACAATGTTGCGAGTTTATCACATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTACTGCCAGCGAACGAAAAGGCGACGGAGGTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAATTCAGAAAGTGAATTCAAGGCAATGGCTGCCGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTATGAGAGTGAGTAA 1839 43.34 MDPNSTDSPISSTVNSSETKPPEVHPQAPVTTGTNNVARDAPSKLSPSGITSWAKNLKISQPQSASQDGATENAGKSAFARFTSGLGLNLSPKSPAPSDSPDGNSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKVHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSKPPAADGSEVSENQNRKSGTNDKDDVFSDSESEGGSSKSKKEATSGSGVEGSAVHTTTKSQTSMTSSDNVASLSHATKQVSLGDGGAKQTATASERKGDGGGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESE* 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 535322 540728 + Chy1G000800.1 Chy01g00080 217261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00080 612 Gene3D - 328 458 - -
Chy01g00080 612 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 346 454 IPR035892 -
Chy01g00080 612 MobiDBLite consensus disorder prediction 1 74 - -
Chy01g00080 612 CDD PTP_PTEN 154 319 IPR045101 GO:0016791
Chy01g00080 612 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311|GO:0016791
Chy01g00080 612 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 14 612 - -
Chy01g00080 612 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Chy01g00080 612 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 14 612 - -
Chy01g00080 612 MobiDBLite consensus disorder prediction 490 512 - -
Chy01g00080 612 MobiDBLite consensus disorder prediction 1 73 - -
Chy01g00080 612 MobiDBLite consensus disorder prediction 86 114 - -
Chy01g00080 612 MobiDBLite consensus disorder prediction 456 472 - -
Chy01g00080 612 MobiDBLite consensus disorder prediction 513 562 - -
Chy01g00080 612 SMART PTEN_C2_2 328 456 IPR014020 -
Chy01g00080 612 MobiDBLite consensus disorder prediction 454 612 - -
Chy01g00080 612 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Chy01g00080 612 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311|GO:0016791
Chy01g00080 612 MobiDBLite consensus disorder prediction 87 114 - -
Chy01g00080 612 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Chy01g00080 612 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 325 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01571 Chy-Chr4:22279642 Chy01g00080 Chy-Chr1:535322 3.72E-46 transposed
Chy01g00080 Chy-Chr1:535322 Chy02g00892 Chy-Chr2:5753818 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00080 K01110 - csv:101222304 1207.2