Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00082 ATGGCTTTACACTCAAACAAACACACAACGACTCAACGCCTCCATAACTCTCTCTTCTTCTTCGATTTACTCCATTGCACTGAACAACAACACCATCAAACAGAGCTTCCCATTTTCCTTAACAATGGCGCCACCACCACTACCAACTTCCCCCTTTCCCATTTCCTCATTTCCGAAGACGAAGAGCTCGCTTATTTGTTATCCAAAGAAAAAGACCAGAATCTCCAAACCCATGCTGTTTTGGAAACCTTGATTCAAAAAGATAATGCTCTGTCTCTCGCTAGAACGGAGGCTATCGACTGGTTGCTTAAAGTTAATGCCTTTTATGGCTTCTCATCTCTTACAGCTCTTTTAGCTATTAATTACCTTGATAGAATCCTCTCTGGACCTCATTTTCAAAGAGATAAGCCATGGATGCTTCAGCTTCTTGCTGTAACTTGCATCTCTTTAGCTGCTAAAATCGAAGAAATTCGTGTCCCTCTTCTTCTAGATCTCCAGGTGGAAGATTCCAAGTACATTTTTGAACCGAAAACGATACAGAGAATGGAGCTTTTGGTTCTTACTGCTCTACAATGGAAGATGCATCCAGTGACCCCTGTTTCGTTTCTTGGTATCATAACAAAAGAGTTTGGAATGAAGAATCAATACATTCAAAAAGAGTTCCTTAGACGTTGCGAGCGTGTTCTTCTCTCTATCGTCTCAGATTCAAGATCGGTGGGGATTCTTCCTTCCGTAATGGCAGTTTCAGCAATGGTTAGTGTTGTTGAAGAGATGGGAAACTGTAATCCCTTAGAGGAGTTTCAAGATCACCTTCTTAATGCCCTCAAAATAAACAAGGTTTCTATTATTTCACCCTCTCTTTCTTTTGTGTGTGTGTGTGTGTGTTTATGA 891 40.85 MALHSNKHTTTQRLHNSLFFFDLLHCTEQQHHQTELPIFLNNGATTTTNFPLSHFLISEDEELAYLLSKEKDQNLQTHAVLETLIQKDNALSLARTEAIDWLLKVNAFYGFSSLTALLAINYLDRILSGPHFQRDKPWMLQLLAVTCISLAAKIEEIRVPLLLDLQVEDSKYIFEPKTIQRMELLVLTALQWKMHPVTPVSFLGIITKEFGMKNQYIQKEFLRRCERVLLSIVSDSRSVGILPSVMAVSAMVSVVEEMGNCNPLEEFQDHLLNALKINKVSIISPSLSFVCVCVCL* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 554313 555392 + Chy1G000820.1 Chy01g00082 217263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00082 296 SUPERFAMILY Cyclin-like 57 195 IPR036915 -
Chy01g00082 296 Gene3D - 76 195 - -
Chy01g00082 296 PANTHER CYCLINS 36 268 IPR039361 -
Chy01g00082 296 Gene3D - 65 271 - -
Chy01g00082 296 Pfam Cyclin, N-terminal domain 64 194 IPR006671 -
Chy01g00082 296 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Chy01g00082 296 CDD CYCLIN 95 187 IPR013763 -
Chy01g00082 296 Pfam Cyclin, C-terminal domain 197 281 IPR004367 -
Chy01g00082 296 SMART cyclin_7 100 188 IPR013763 -
Chy01g00082 296 PANTHER CYCLIN-D3-1 36 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00082 Chy-Chr1:554313 Chy02g00746 Chy-Chr2:4612117 2.29E-44 dispersed
Chy08g00736 Chy-Chr8:15131203 Chy01g00082 Chy-Chr1:554313 5.03E-24 transposed
Chy01g00082 Chy-Chr1:554313 Chy02g00890 Chy-Chr2:5739196 1.45E-66 wgd
Chy01g00082 Chy-Chr1:554313 Chy03g01563 Chy-Chr3:17786895 1.47E-71 wgd
Chy01g00082 Chy-Chr1:554313 Chy06g01061 Chy-Chr6:8577731 1.72E-76 wgd
Chy01g00082 Chy-Chr1:554313 Chy07g00160 Chy-Chr7:1346167 1.01E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00082 K14505 - csv:101222066 535.413