Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00085 ATGGCGCCATTTCCGGTTGAAACCATGAACCACTCACTGCCACTCCACCTACTACTACTATGCTCACTACTCTTCACAATTTCCTCCGCCTCAATTCCTTCCCTTTCCCAAGAAATTGAAGCTCCGCTGTCCAGCAGCAACGAAAATCTCTTCCCTATCCGTAGAGAGGTTTACGGCGATGGCCGAATCTTCGATATCACTCACCGATACTCCCCAGAGACCCCCTGTTGGGACTTCCAGGAAAATGGGCTCGGCCAGTTTGTGTGGTTGACGAGGACCATGAAGAACGGCTCCGAAGCCAATTTCTCCCAGTTTAAGCTTCCCAATCATGCCGGCACGCACGTTGACGCTCCTGGTCACATGTTTGACCATTACTTCGACGCCGGATTCGATGTCGATACGCTCGATTTGGGAGTGCTCAATGGTCCTGCACTGTTGGTGGATGTACCAAGGGACGCAAATATAACAGCTGAAGTTATGAAGTCCTTAAATATCCCCAAAGGAATAATACGCGTGTTGTTCAGGACACTAAATACTGACAGGAAGCTCATGTATAAAAAGAAATATGACACAAGCTATACTGGATTCATGAAGGATGGAGCTAAATGGTTGGTGGAGAATACTGACATCAAACTTGTTGGACTTGATTACCTATCAGTTGCAGCTGATGATGACCTGATTCCAGCTCACCTTGAGCTTCTGGAAAGCAGAGAAATCATTCTGGTGGAAGGCCTAAAACTGGACGACATCGAGACTGGATTATATACGGTTTATTGCTTACCTCTGAGGTTGTTAGGAGCAGAGGGATCACCAATACGATGCATTCTAATCAAATGA 837 46.71 MAPFPVETMNHSLPLHLLLLCSLLFTISSASIPSLSQEIEAPLSSSNENLFPIRREVYGDGRIFDITHRYSPETPCWDFQENGLGQFVWLTRTMKNGSEANFSQFKLPNHAGTHVDAPGHMFDHYFDAGFDVDTLDLGVLNGPALLVDVPRDANITAEVMKSLNIPKGIIRVLFRTLNTDRKLMYKKKYDTSYTGFMKDGAKWLVENTDIKLVGLDYLSVAADDDLIPAHLELLESREIILVEGLKLDDIETGLYTVYCLPLRLLGAEGSPIRCILIK* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 577794 580788 - Chy1G000850.1 Chy01g00085 217266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00085 278 SUPERFAMILY Putative cyclase 61 277 IPR037175 GO:0004061|GO:0019441
Chy01g00085 278 Pfam Putative cyclase 64 220 IPR007325 GO:0004061|GO:0019441
Chy01g00085 278 PANTHER CYCLASE-LIKE PROTEIN 2 14 278 IPR007325 GO:0004061|GO:0019441
Chy01g00085 278 PANTHER KYNURENINE FORMAMIDASE-LIKE ISOFORM X1 14 278 - -
Chy01g00085 278 Gene3D Putative cyclase 58 277 IPR037175 GO:0004061|GO:0019441
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00085 - - - csv:101221604 523.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00084 Chy-Chr1:574109 Chy01g00085 Chy-Chr1:577794 8.73E-133 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g613 . . . . . . . . . Cmo11g01388 . . . . . Cpe04g00300 . . . . . . . . Cla02g00629 Cam02g0663 Cec02g0667 Cco02g0691 Clacu02g0671 Cmu02g0665 Cre02g0984 . . . . Lsi03g00526 Csa07g00729 . Cme01g00079 . . . Bda14g01456 . . Bma03g01359 . . . . . . Car11g01114 . . . . . . . . . . . . . . . . . Lsi03g01043 . Chy01g00085 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002722 3 2 2 2 2 2 1 2 2 2 1 2 0 2 2 1 2 2 1 2 2 2 2 2 2 1 2 3 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00085 Chy_Chr01 FPKM 4.940042 5.274938 2.088823 2.307542 2.354117 2.652889 2.986795 2.941354 2.712267 3.024396