Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00086 ATGACTATCCCTTCTTCCTTCCTTTCTCTCCTCCTCCTCCTCCTCTCTCTTTCCTCCTCCGTTCAATCTCTCACCTCCCCTTCTGATGTGTTCGCCCTCAAAGCCTTTAAATCCGCCATTAAACCTTCCTCCATTCCCCCTTGGTCCTGTTTAGCTTCTTGGAATTTCTCCACCGATCCCTGCGCTCTCCCTCGCCGCACCTTCTTCTCTTGCGGCCTCCTCTGCAACTCCGCCGCCACTCGTGTCACCCAACTCACCCTTGACCCTGCCGGCTACTCCGGTACTCTTTCTCCACTTATCTCCAAACTTACTTACTTAACTGTTCTTGATCTCTCTGATAATTCCTTCTCTGGTTTCATCCCCTCTGCAATTTCCTCTCTTTCTAATCTCCAAATCCTCACTCTCCGATCCAATTCCTTTTCTGGATCCATTCCCCCTTCTATTTCCAATCTCAAATCACTTGAATCTTTGGACTTTTCTCATAATTCCCTCACTGGGAATCTCCCCAAATCTCTGCATTTTCTCTCTCTTTTAAGACGTCTCGATCTCAGCTTCAATCAACTCACTGGCTCTCTTCCTAAACTCCCACCTAACTTACTCGAACTCGCCTTAAAACGAAATTCCCTTTCTGGGTATTTGGATAAATCGTCTTTCTCCGACTCCCCTCAATTGGAAGTTATCGAACTAAGTGAGAATTACCTCGCCGGAACCTTACCGTCTTGGTTCTTCCTCCTTCCCTCTCTTCAACAGATCAATCTCGCTAATAATACTTTAACGCATATCGAAATCTCCCCTGCCACCGCTGGTGGTAGCGATCTCGTTGCCATCGATTTGGGGTTCAACAAAATCGAAGGGAACGTACCGGTGAATTTCGTCACCTATCCGGCGTTGTCATCGTTGTCGCTCCGGTACAATCGGTTACGTGGCGTGATCCCATTAGAGTTCAGTAAGAAGAAAACAATGAAGAGATTATACTTGGATGGGAACTTCTTGACCGGGAAGCCACCGGCGGCATTCTTCTCAGGCGGTGAAGATCCAGTTTCCGGTAGCTTGGGGGATAACTGTCTGCAGGGATGTCCACAATCATCTCAGCTGTGCGCTCCGTCGCAGAAGCCGAATGCGGTTTGCAAAGAAGCGTACGGAAACGGGAGGGGAAGAGGAAAACCGATGACTTGA 1176 48.47 MTIPSSFLSLLLLLLSLSSSVQSLTSPSDVFALKAFKSAIKPSSIPPWSCLASWNFSTDPCALPRRTFFSCGLLCNSAATRVTQLTLDPAGYSGTLSPLISKLTYLTVLDLSDNSFSGFIPSAISSLSNLQILTLRSNSFSGSIPPSISNLKSLESLDFSHNSLTGNLPKSLHFLSLLRRLDLSFNQLTGSLPKLPPNLLELALKRNSLSGYLDKSSFSDSPQLEVIELSENYLAGTLPSWFFLLPSLQQINLANNTLTHIEISPATAGGSDLVAIDLGFNKIEGNVPVNFVTYPALSSLSLRYNRLRGVIPLEFSKKKTMKRLYLDGNFLTGKPPAAFFSGGEDPVSGSLGDNCLQGCPQSSQLCAPSQKPNAVCKEAYGNGRGRGKPMT* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 582338 583513 + Chy1G000860.1 Chy01g00086 217267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00086 391 PRINTS Leucine-rich repeat signature 106 119 - -
Chy01g00086 391 PRINTS Leucine-rich repeat signature 151 164 - -
Chy01g00086 391 SUPERFAMILY L domain-like 70 358 - -
Chy01g00086 391 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 6 383 - -
Chy01g00086 391 Pfam Leucine Rich Repeat 322 339 IPR001611 GO:0005515
Chy01g00086 391 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515
Chy01g00086 391 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515
Chy01g00086 391 Pfam Leucine Rich Repeat 153 175 IPR001611 GO:0005515
Chy01g00086 391 Pfam Leucine rich repeat 197 258 IPR001611 GO:0005515
Chy01g00086 391 SMART LRR_typ_2 127 150 IPR003591 -
Chy01g00086 391 SMART LRR_typ_2 103 126 IPR003591 -
Chy01g00086 391 SMART LRR_typ_2 151 174 IPR003591 -
Chy01g00086 391 SMART LRR_typ_2 245 270 IPR003591 -
Chy01g00086 391 SMART LRR_typ_2 175 202 IPR003591 -
Chy01g00086 391 Gene3D Ribonuclease Inhibitor 196 365 IPR032675 -
Chy01g00086 391 Pfam Leucine rich repeat N-terminal domain 27 61 IPR013210 -
Chy01g00086 391 Gene3D Ribonuclease Inhibitor 27 195 IPR032675 -
Chy01g00086 391 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 6 383 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00086 - - - csv:101221363 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00086 Chy-Chr1:582338 Chy03g00183 Chy-Chr3:1684606 1.13E-17 dispersed
Chy01g00086 Chy-Chr1:582338 Chy07g01273 Chy-Chr7:17452066 4.69E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00086 Chy_Chr01 FPKM 37.304291 42.01067 0.140875 0.20618 0.658088 0.760666 0.805234 0.0 0.0 0.201365