Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00087 ATGGAGAATTTGGATTATAGTGATAGAGAGGAGGACACGTGGCAGAGTGGGTTTCCTCAAAAAGCAAAATGTGGTAGAAAACGGCCATCGTCAACCAGTGTGTTAAGCAAGCCAACTGGTCAAAAGAAGCATGCAGTGAAACAAAATTCTGTTTCTATAAGATGTGAGCAAAGTACCCAACAGAGTAATCTGGATGTTTGGCTTGGGCGGTCTGCAATGGTAGGATTTGCAATTGCAATTAGTGTTGAAATTGCAACGGGCAAGGGACTTTTAGAGAACCTTGGAGTAACGTCTCCCCTGCCCAGTGTGGCCTTGGCCGTTACCGCATTGTTGGGCTTACTCTCTCCTGCAGAACTAAGAGCTGGTGGTGCTGGTTTGAAAATTGTATCATCTTCTTTATATTCCTTGATTTCGGACATGGGTGCAGTGATATCTAGGTTGAGGAAGAAACTTTTTCAGAACCGTGAAGTGAGAATCCTGATGCTCGGTCTTGATGCGTCAGGGAAGACAACCATTTTGTACAAACTAAAACTTGGTGAAATAGTTATGACCGTGCCAACTATTGGGTTCAATGTGGAAACAGTAGAATACAAAAATATGAGCTGCAGTGTTTGGGATGTTGGAGGACAAGATAAGATAAGGCCATTATGGAGACATTACTTCCAGAACACCCAAGGACTTGTATTTGTTGTGGATAGTGTTGACAGAGGGAGAATTTGTGAAGCCCGTAATGAGTTGCATCGTATTCTCAGTGAGGCAGAGCTAAGGAATGCAGCTGTGCTTGTATTTGCAAACAAGCAAGATCTTCCTCATTCAATGACTGTCTCTGAAATCACAACTAAACTTGGCCTCCACACACTTTCTCAAAGAAGATGGTGGAATATTCTTTTAACTCAAGATCATGTTGCTTAG 912 42.65 MENLDYSDREEDTWQSGFPQKAKCGRKRPSSTSVLSKPTGQKKHAVKQNSVSIRCEQSTQQSNLDVWLGRSAMVGFAIAISVEIATGKGLLENLGVTSPLPSVALAVTALLGLLSPAELRAGGAGLKIVSSSLYSLISDMGAVISRLRKKLFQNREVRILMLGLDASGKTTILYKLKLGEIVMTVPTIGFNVETVEYKNMSCSVWDVGGQDKIRPLWRHYFQNTQGLVFVVDSVDRGRICEARNELHRILSEAELRNAAVLVFANKQDLPHSMTVSEITTKLGLHTLSQRRWWNILLTQDHVA* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 584897 594233 - Chy1G000870.1 Chy01g00087 217268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00087 303 MobiDBLite consensus disorder prediction 1 52 - -
Chy01g00087 303 PANTHER ADP RIBOSYLATION FACTOR-RELATED 140 293 IPR024156 GO:0005525
Chy01g00087 303 MobiDBLite consensus disorder prediction 1 16 - -
Chy01g00087 303 SMART arf_sub_2 140 300 - -
Chy01g00087 303 PANTHER ADP-RIBOSYLATION FACTOR, ARF 140 293 - -
Chy01g00087 303 TIGRFAM small_GTP: small GTP-binding protein domain 155 277 IPR005225 GO:0005525
Chy01g00087 303 Gene3D - 135 300 IPR027417 -
Chy01g00087 303 MobiDBLite consensus disorder prediction 26 52 - -
Chy01g00087 303 PRINTS GTP-binding SAR1 protein signature 213 238 IPR006689 GO:0003924|GO:0005525
Chy01g00087 303 PRINTS GTP-binding SAR1 protein signature 258 279 IPR006689 GO:0003924|GO:0005525
Chy01g00087 303 PRINTS GTP-binding SAR1 protein signature 158 181 IPR006689 GO:0003924|GO:0005525
Chy01g00087 303 PRINTS GTP-binding SAR1 protein signature 186 210 IPR006689 GO:0003924|GO:0005525
Chy01g00087 303 SUPERFAMILY Chlorophyll a-b binding protein 65 106 - -
Chy01g00087 303 SMART sar_sub_1 140 302 IPR006689 GO:0003924|GO:0005525
Chy01g00087 303 Pfam ADP-ribosylation factor family 147 297 IPR006689 GO:0003924|GO:0005525
Chy01g00087 303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 293 IPR027417 -
Chy01g00087 303 ProSiteProfiles small GTPase Arf family profile. 150 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00087 K07937 ARF1_2; ADP-ribosylation factor 1/2 - jre:108996172 331.257
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00087 Chy-Chr1:584897 Chy10g00900 Chy-Chr10:14717824 1.73E-84 dispersed
Chy10g00890 Chy-Chr10:14677134 Chy01g00087 Chy-Chr1:584897 9.64E-07 transposed
Chy01g00087 Chy-Chr1:584897 Chy02g00888 Chy-Chr2:5735336 1.73E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g616 . . . Bda08g00771 . . . . Cmo19g00598 Cmo11g01390 . . . . . Cpe04g00302 Cpe15g00470 . . . . . . . Cla02g00632 . Cec02g0671 Cco02g0695 . . Cre02g0988 . Cone8ag1110 . . Lsi03g00528 Csa07g00726 . Cme01g00082 . . . . . . . . . . . Cma11g01725 Cma19g00582 Car11g01116 Car19g00444 . . . . . . . . . . . . . . . . . . Chy01g00087 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011017 4 0 1 1 2 0 2 0 0 1 1 0 2 1 1 2 0 1 2 0 1 1 0 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00087 Chy_Chr01 FPKM 32.726822 32.008266 17.635607 19.65893 5.631947 7.607919 7.052812 18.781706 18.291805 17.056202