Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00095 ATGACCTCCTCCATGGATTCCCTTCCTCATGTCTTCCTCGTCAGCTTCCCTGGCCAAGGCCACATAAATCCCATGCTCCGTCTTGGCAAAATACTCGCTGCCTCCGGCCTCCTCGTCACCTTCTCCACCACTGCTTATCTCGGCCAGGACATGAAGAAGGCTGGCAGCATCTCTGACACCCCGACCCCTCTCGGCCGTGGCTTCCTCCGCTTTGAATTCTTTGACGATGGCCGCATCCACGATGATTCTGCCCGCTCCACCACTCCCCTCTCCTTTGACCAATACATGCCGCAACTCCAACGTGTAGGTTCGATTTCCTTATTCAACATCTTGAAAAACCAAACTAAAGAAAACCGACCACCTGTCTCCTGTGTTATTGGAAACCCTTTTGTGCCTTGGGTGTGTGACGTCGCCGATGACCTCGGAATTGCCTCCGCTGTGTTTTGGGTCCAATCATGTGCCGTTTTCTCAATTTATTACCACCATTTTAATGGCTCAATCCCTTTCCCATCTGAAACCCAACCAGATGTTGAGGTTAAAATTCCTTCTTTGCCTCTTTTAAAGCACGATGAAATCCCAAGCTTCTTGCTTCCTGACAAGCCTCTTCATGTCATTGGGAAAGCCATTTTGGGGCAGTTTTGGAACCTCTCAAAGCCCTTTTGTATATTAATCGATACATTTGAAGAGCTGGAGAGCGAGATCGTTGACTTCATGTCGAAAAAGTTCCCGATAAAGACAGTGGGGCCGTTGTTCAAGCATTGTGGTGAAATTAAAACGAAAATTTCAGGAGATTGCTTGAAAATTGATGATTGTATGGAGTGGCTAGACTCAAAGCCAAAAGGGTCAGTAATTTATGTGTCGTTTGGGAGTGTGGTGTATTTGAAACAAGAACAAGTTGATGAGATTGCTTATGGACTTGTAGATTCTGGCTTCTACTTCTTGTGGGTCTTGAAACCACCTGCTTCAAGTTTCGGGGTCAAGCGCCATATTCTTCCTAATCAGCTCACAAATGCCAAGTTTCTTGTCGATGTCTTCGGCGTCGGCCTCCGCTTGCCACATGGCGGCACACCAGAAGACAAGCTAATCAAAAGAGATGAAATCAAGAAATGCCTTAAAGAATCCATGGAAGGACCGAAGGCGGTGCAGATAAGACAGAAGGCTTTGGAGAGGAAAATTGCGGCGGAGAAGGCGGTGGCCGACGGTGGGTCTTCAGACAGAAATATCAAATACTTTATTGATGAGATAAGGAAACGTTCTCTTGTTTGTGGTGGTAATCTCCAAGTTTAA 1287 46.78 MTSSMDSLPHVFLVSFPGQGHINPMLRLGKILAASGLLVTFSTTAYLGQDMKKAGSISDTPTPLGRGFLRFEFFDDGRIHDDSARSTTPLSFDQYMPQLQRVGSISLFNILKNQTKENRPPVSCVIGNPFVPWVCDVADDLGIASAVFWVQSCAVFSIYYHHFNGSIPFPSETQPDVEVKIPSLPLLKHDEIPSFLLPDKPLHVIGKAILGQFWNLSKPFCILIDTFEELESEIVDFMSKKFPIKTVGPLFKHCGEIKTKISGDCLKIDDCMEWLDSKPKGSVIYVSFGSVVYLKQEQVDEIAYGLVDSGFYFLWVLKPPASSFGVKRHILPNQLTNAKFLVDVFGVGLRLPHGGTPEDKLIKRDEIKKCLKESMEGPKAVQIRQKALERKIAAEKAVADGGSSDRNIKYFIDEIRKRSLVCGGNLQV* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 616486 618836 - Chy1G000950.1 Chy01g00095 217276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00095 428 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 9 334 - -
Chy01g00095 428 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 333 420 - -
Chy01g00095 428 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 416 - -
Chy01g00095 428 Gene3D Glycogen Phosphorylase B; 1 262 - -
Chy01g00095 428 Gene3D Glycogen Phosphorylase B; 397 408 - -
Chy01g00095 428 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 333 420 - -
Chy01g00095 428 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 9 334 - -
Chy01g00095 428 Gene3D Glycogen Phosphorylase B; 263 329 - -
Chy01g00095 428 Gene3D Glycogen Phosphorylase B; 333 396 - -
Chy01g00095 428 CDD GT1_Gtf-like 9 404 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00095 K23279 UGT84A13; gallate 1-beta-glucosyltransferase [EC:2.4.1.136] - csv:101216061 683.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00095 Chy-Chr1:616486 Chy01g00098 Chy-Chr1:640763 7.63E-137 dispersed
Chy01g00095 Chy-Chr1:616486 Chy01g00096 Chy-Chr1:625295 4.67E-16 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g623 . . . Bda08g00763 . . . . . . . . . . . . . Bhi05g01107 . . . . . . . . . . . . . . . . . . Csa07g00720 . Cme01g00088 . . . . . . . . . . . Cma11g01722 . . . . . . . . . . . . . . . . . . . . . Chy01g00095 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000463 3 5 1 1 1 4 5 5 5 4 5 5 4 3 3 5 5 4 4 5 4 3 4 5 5 5 3 5 4 3 118
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00095 Chy_Chr01 FPKM 3.545936 3.682508 4.754463 4.792002 7.32024 7.751133 7.29163 10.949349 10.401923 11.283172