Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00097 ATGCCGCAGCTTGAGATCACGGGTAAGTCGGCGTTGTCTCAGATGCTTAGAAACCGCGCCGGTGAGAATCGGCCGGTTTGTGATGTGGCTAACGATATCGGAATCCCCTGTTCTGTTCTCTGGGTTCAGTCTTGCTCCGTTTTCTCTACTTATTATCATTACTCACGTGAATCTGTGGATTTCCCTTCTGAATCCGATCCTTATTGTGATGTTCAATTGCCATCGCTTCCATTACTGAAGTACGACGAAATCGCAAGCTTCTTGCACCCTCATGGGGCGTATAAGGCGATTGGACGGTCGATTTTGCAGCAGTTTCGTAACGTGTCGATACCATTTTGTATTTTAATGGATACATTTGAGGAACTTGAGAGAGATATCATTAAGCATATGTCGACGATTTTCCCTATTAAACCGATTGGTCCTCTGTTCAAGAGACTGAAATTTTCCCACGATAACAAAAAGGCGGATCTCTCCGGCGATTTCTTGAAAGCGGATGATTGCTTCGAGTTGCTTGATTCGAAGCCACCGAATTCAGTGATTTATCATTTGAGTCAGAAACAAATCGAGGAAATGGCTCACGCACTATGTAATTCTGGGTTTTCGTTCTTGTGGGTGATGAAGCCTTTGCCAAAAGACGTGGCGGAATGTTTAGGATTGAAACAGCATGTTCTTCCTGATGGGTTTTTAGAGAAAGCAGGGGAAAGAGCTAAGATTGTAAAATGGAGTCCACAACAGAAGGTTCTGTCTCACCCTTCCATTGCTTGTTTTGTTACTCGCTGTGGATGGAACTCATCGGTGGAGGCTCTGAGCTCCGGCGTGCCGGTGCTGGTGCTTCCGCAGTGGGGAGATCAGGTCACCAACACCAAGTTTTTAGTGGAGGAATACGGGGTTGGGATCCGGCTGGGCCGCGGTGAGTCGGAAAAGAGATTGGTGGAGAGGGCTGAGTTTGAGCAATATCTGAGGGACGCCATTATTGGACCCAAGGCAAAGGAGCTTAGAGAAAATGCTTAG 1011 46.88 MPQLEITGKSALSQMLRNRAGENRPVCDVANDIGIPCSVLWVQSCSVFSTYYHYSRESVDFPSESDPYCDVQLPSLPLLKYDEIASFLHPHGAYKAIGRSILQQFRNVSIPFCILMDTFEELERDIIKHMSTIFPIKPIGPLFKRLKFSHDNKKADLSGDFLKADDCFELLDSKPPNSVIYHLSQKQIEEMAHALCNSGFSFLWVMKPLPKDVAECLGLKQHVLPDGFLEKAGERAKIVKWSPQQKVLSHPSIACFVTRCGWNSSVEALSSGVPVLVLPQWGDQVTNTKFLVEEYGVGIRLGRGESEKRLVERAEFEQYLRDAIIGPKAKELRENA* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 630928 631974 + Chy1G000970.1 Chy01g00097 217278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00097 336 Gene3D Glycogen Phosphorylase B; 26 151 - -
Chy01g00097 336 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 1 336 - -
Chy01g00097 336 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 1 336 - -
Chy01g00097 336 CDD GT1_Gtf-like 1 336 IPR002213 GO:0008194
Chy01g00097 336 Gene3D Glycogen Phosphorylase B; 152 336 - -
Chy01g00097 336 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 26 336 - -
Chy01g00097 336 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 178 299 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00097 - - K23279 csv:101215099 626.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00097 Chy-Chr1:630928 Chy11g00559 Chy-Chr11:6323626 4.04E-56 dispersed
Chy01g00096 Chy-Chr1:625295 Chy01g00097 Chy-Chr1:630928 8.92E-126 tandem
Chy01g00097 Chy-Chr1:630928 Chy01g00098 Chy-Chr1:640763 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g633 . . . . . . Bma05g00532 . Cmo19g00593 Cmo11g01394 . . . . . . Cpe15g00465 Bhi05g01106 . . . . . . Cla02g00640 . . . . . . . . . . Lsi03g00535 Csa07g00718 . Cme01g00089 . . . . . . . . . . . Cma11g01721 Cma19g00578 Car11g01120 Car19g00438 . . . . . . . . . . . . . . . . . . Chy01g00097 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000463 3 5 1 1 1 4 5 5 5 4 5 5 4 3 3 5 5 4 4 5 4 3 4 5 5 5 3 5 4 3 118
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00097 Chy_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0