Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00100 ATGGGTAGCGTTGAAAGAGAAAGAAGAACAACCAAAGGTTTTGCTGCAAGAGACCCATCTGGGTTTCTCTCTCCTTACACTTATGAACTCAGAGAAACAGGGCCAGAAGATGTTTACATTAGAGTTATATGCTGTGGGCTTTGTCATACTGATGTTCATCAAATCAAAAATGATCTTGGAGTGTCCAATTACCCCATGGTTCCAGGGCATGAAGTGGTTGGTGAAGTGATGGAAATTGGGGAGAATGTGAAGAGATTTAAAGTGAAGGATATTGTGGGAGTTGGATGTATAGTCGGATCTTGTAAAACTTGTGAGAGATGTGAAACTGATAGAGAACAATATTGCAATAACAAGATTTGGACTAACAATGATGTCTATACCGACGGCCGCCCTACGCAAGGCGGCTTCGCCGCCGCCATGGTCGTCGACCAAAGGTTTGTGGTGAAAGTACCCGATGGAATGGCACCGGAGCAGGCAGCGGGGCTGCTATGCGCAGGCGTGACGGTGTACAGTCCTCTGAACCATTTTGGGTTAAATAAAAGTGGGCTAAGAGGAGGGATCTTAGGTCTTGGAGGAATTGGACACATGGGGGTGAAATTGGCAAAGGCATTGGGTCATCATGTCACAGTCATAAGCTCCTCCAACAAGAAGAGGGAAGAAGCTCTAGAGCATCTCGGTGCCGACGACTACCTGATTAGCTCCGACGAGGCTCGGATGAAACAGGCCGTCGACTCTCTTGACTACATCATCGACACCGTCCCAGCCTTTCACCCTATTGAGCTTTATCTTTCGTTGCTCAAGCTCGATGGCAAGTTGATCTTGTTGGGCGTTATTAATAAACCTCTCCAATTCGTCTCTCCCATGGTCATCCTTGGGAGGAAGACGATCACGGGGAGTTTCATTGGGAGCATGAAGGAAACACAGGAGATTTTGGAACTTTTCAAAGAGAAAGAATTGAGTTCAATGGTGGAAGTGGTGAAGATGGATTACATAAACAAAGCCATTGAAAGGTTGGAGAAGAATGATGTTAGATACAGGTTTGTGGTGGATGTTGAGGGAAGCAATTTCTAA 1071 45.94 MGSVERERRTTKGFAARDPSGFLSPYTYELRETGPEDVYIRVICCGLCHTDVHQIKNDLGVSNYPMVPGHEVVGEVMEIGENVKRFKVKDIVGVGCIVGSCKTCERCETDREQYCNNKIWTNNDVYTDGRPTQGGFAAAMVVDQRFVVKVPDGMAPEQAAGLLCAGVTVYSPLNHFGLNKSGLRGGILGLGGIGHMGVKLAKALGHHVTVISSSNKKREEALEHLGADDYLISSDEARMKQAVDSLDYIIDTVPAFHPIELYLSLLKLDGKLILLGVINKPLQFVSPMVILGRKTITGSFIGSMKETQEILELFKEKELSSMVEVVKMDYINKAIERLEKNDVRYRFVVDVEGSNF* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 657397 659196 + Chy1G001000.1 Chy01g00100 217281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00100 356 Pfam Zinc-binding dehydrogenase 192 315 IPR013149 -
Chy01g00100 356 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Chy01g00100 356 Gene3D - 165 321 - -
Chy01g00100 356 Pfam Alcohol dehydrogenase GroES-like domain 36 150 IPR013154 -
Chy01g00100 356 Gene3D - 14 351 - -
Chy01g00100 356 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 7 355 - -
Chy01g00100 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 319 IPR036291 -
Chy01g00100 356 SMART PKS_ER_names_mod 21 349 IPR020843 GO:0016491
Chy01g00100 356 CDD CAD1 12 350 - -
Chy01g00100 356 PANTHER ALDEHYDE REDUCTASE 7 355 - -
Chy01g00100 356 SUPERFAMILY GroES-like 17 182 IPR011032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00100 Chy-Chr1:657397 Chy11g00067 Chy-Chr11:729780 1.91E-122 dispersed
Chy04g00399 Chy-Chr4:3533198 Chy01g00100 Chy-Chr1:657397 4.71E-114 transposed
Chy09g01356 Chy-Chr9:15396659 Chy01g00100 Chy-Chr1:657397 1.95E-98 transposed
Chy01g00100 Chy-Chr1:657397 Chy06g01051 Chy-Chr6:8455836 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00100 K00083 - csv:101214622 671.003