Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00104 ATGAATTCTGATTCGTCTCGTTCGGCTAATTCCTCCGCCCAGAAATCCAAGCGAATTCGTGACAATTCATCTCCGTCGAACCCTTCCGGTGGCAGTGGCAACAAGAGGAAACGGATCAACCAGAAAACCCTAGGTGTCGCATGGGGAGCCAATTCCATTTCACCCTCTCGCAAATCTCCCTTTTCAGATTTTGGAAGTTATATGGTAGAAAAGAACAGGAAACTGCACAATCAGTTTAATCTTGATGCTTCAAGTGCTTCACATAGTGGTGTGAACTCAGGAAATCAAATATTTCAGGGTCTGTCTATCTTTGTTGACGGTTTCACAATTCCTTCCAGTCAGGAATTGCGGGGTTATATGTTGAAGTACGGTGGAAGATTTGAGAATTATTTTTCAAGACGTAGTGTTTCTCATATTATTTGCAGTAATTTACCGGACAGTAAAATAAAGAATCTCAGGTCATTCAGCCGTGGACTCCCAGTTGTAAAACCCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGCTGGGTTCCTTACCAACTTAATCAGCTTGTAAATAATCAACCAAGATTATCAGAATTCTTTTCTATGAAAAAAGGTCCAACGGTGGAGAAACCCAAAATTTGCTTGACTTCTGAAAAGAAATATGGAACAGAAGATTCACTGTCCCCGGTGGCTATGAATTTGAAGGATACCACTTTGTCGGAAGTGAATGAATTGGTAGGATATAGAGCAGAGATGCATTCTGACTCTGAAATGAATCTTCAAGATAATGCAGATGCTAAACTGAATGAGAAGTCAAGTGATGATTTTGAGGCTGCCAAACTGAAGGATACAAGTATATCTGATGTAGATGTATCAATTGAATATAAACCACAATTTTGTGAAAGTTTTGAGATGCTCCCTCAGAAGGATGCTGATGTAGAAGTACAGAAAGGATCAAGCAGTGAAAAATATAATTATGCAGATGAAGAACCAGGAATTGATGATGTGGGTCAGAGCTGTGAAGAAAATATATCTAGTTTTCATGGTTTGTCTGCATCAACACACAATGGTAGCACCAATAGTGATGGATCATCAAGTTCTATGGCGGCTGGGTCTTCTAAGCTGCAGCATTCAACACTAGAGAATCCAGATTTTATGGAAAATTATTTCAAGAAGTCAAGGCTGCATTTCATTGGAACTTGGAGAAATCGTTACTATAAGCGTTTTCCACGGTTAGCTAATGGGTCCAATTCTGTGACTTCTCATATCAATGGTTCTTCCCACAATCAGTCTGCCACTATTATCCATGTTGACATGGACTGCTTTTTTGTCTCAGTGGTTATTCGAAACATTCCAAAATTTAAGGATAGGCCTGTTGCTGTATGCCACTCAGATAATCCTAAAGGAACTGCAGAAATTTCATCTGCAAACTACCCTGCTCGAAGTTATGGAGTCAAAGCAGGAATGTTTGTTAGAGATGCAAAGGCTCTTTGTCCCCATCTTGTTATTTTTCCATATGACTTCAAGTCCTACGAGGGGGTAGCTGATCAGTTCTATGATATATTGCACAAGCATTGTGAGAAAGTGCAGGCTGTAAGTTGCGATGAAGCATTTTTGGATATCTCGGGCACAAACAATGTAGATCCTGAGGTATTGGCTTCAAAAATAAGAAAAGAAATCTTTGATACAACAGGATGTACTGCAAGTGCTGGAATAGCTACAAATATGCTAATTGCTCGCCTTGCCACTAAAACTGCAAAACCGGATGGTCAGTGTTACATTCCTTTAGAGAAGGTTGATGATTATTTAAATCCGCTTCCTATCAAGGACCTTCCTGGAATAGGGCATGCCATAGAGGAGAAGCTGAAGAAAAGAAGTGTTTTGACTTGTAGTCAGCTGCGTATGTTATCCAAGGACTCTCTTCAAAAAGACTTTGGATTAAAAACGGGGGAAATGTTATGGAACTATAGTCGAGGGGTGGACAATCGTGCAGTTGGGTTGATCCAGGAAAGCAAATCCATAGGAGCTGAAGTGAATTGGGGTGTTAGGTTCAAGGACTTCAAAGATTGTCAATGCTTTCTCTTGAACCTCTGTAAGGAGGTTTCATTACGGTTGAATGGATGTGGAGTGCAGGGACGCACCTTTACCCTCAAGATAAAAAAACGGAGAAAAAATGCTGATGAACCCACAAAGTATATGGGCTGTGGAGATTGTGAAAACTTGAGCCATTCATTAACGGTTCCTGTTGCCACTGATGATATGGAAATTCTTCAAAGAATAGTAAAGCAACTTTTCGGGTTTTTTGTCATAGATGTCAAAGAAATTCGAGGTATTGGCTTACAAGTTTCGAAACTTCAAAATGTGGATATCTCTAGGCAAGGGACGAAAAGAAATTCTTTGGATTCATGGCTCAGTTCATCTGCAACTACAAATGTAGAAAATGTTATTGGTCCTTCGGTAAAGGAAGTGGCTAATATAGATAATGAGAAACAGAGTAACTCTGGAACTTTAGATCAGTTATCTGCTGATCCTATAAGCCATCTGATTCAGATGGAGAACAACCGGCACCATAGTGAAGCTTTGAACCCGGTTTCACCTCCACCTCTTTGCAATCTGGATATTGGAGTTATAAGGAGCTTACCTCCTGAACTGTTTTCAGAGTTAAATGAAATTTACGGTGGGAAACTAATTGATCTCCTAGCTAAGAGCAGAGACAAAAATGAAGTTTTCTCCTCTTCTATAAGGGTTCCGTCTCAAGGATCAGGAGGTGATGGACTTACTTTATCGGATATCCAAGGAAACAAAGTACAGTCCGAAAATAAGATTTCTAGGGAAGGATTGTACAATATGGTGGCTCCTATTACCACCTCTGGATCTCATAGAATTGATTTACTACCTTCATCTCTAAGTCAAGTGGATCCATCAGTATTACAAGAGTTACCTGAACCACTGAGGGATGACATACTTAAGCAACTCCCAGCTCACAGGGGAAATGAGCTTTCTTTGGAACACGCTTTCAAAGATCATCGGGAATCAGGCAGTGGTGTTGAGAATACATCTGGCTCAGTGGATCCTTTGATGGAAAACGATCTTTGGTCTGGGAACCCACCTCTATGGGTTGATAAATTTAAAGCCAGTAATTGCTTGATATTAGAACTTTTTGCAGAGATCTATACAGAATCAGGATTACCGGGAAATCTATATGAGATTTTGCTAAGGACTTCATCTCAATCTTGGCATCCTTCAGCTGCAGATTCTGATGGTTGGGATGGTGCTATCTATGGCTTATGTGAACTTCTAAAGCAGTACTTTAAGTTAAAGATAGAGTTGGACATCGAGGAGACCTATGTTTGTTTTCGTCTGCTTAAGAGGTTAGCAATGAAGTCCCAGCTGTTTTCGGAAGTCTTCAACATTATTGATCCATACCTTCAGGGGGCAGTCAATGAAATTTACGGCGGAAGTTTGAAGGTTAAATGCTCACAAATTCGAAGTGCCACCACTCTACTCTATCAAGCTCGGATGAACTTAAAAGAAGAAGAAATCGTAGGATTGGCACCGTTGTCCCGCCTCCCATCAGATAGATATCTATCCACTCGGGGGAACTTTTGGGTTTGGAGAAAGGAATTAAATGGAGCTTTCACCGATCAGTCTCCAACTCCAAACCTTGCTTTTGCTTCTGTGGCCCAAAATACGTTGGCAAAGATTTTACTTCAAATATTCAAATCAGACGAGCGCACCCCTTTGATAGCAAATGCAAAAGCTATGTTGCAAACTTTATTTTCAAACCAAAACTATCAAACTTAA 3798 40.26 MNSDSSRSANSSAQKSKRIRDNSSPSNPSGGSGNKRKRINQKTLGVAWGANSISPSRKSPFSDFGSYMVEKNRKLHNQFNLDASSASHSGVNSGNQIFQGLSIFVDGFTIPSSQELRGYMLKYGGRFENYFSRRSVSHIICSNLPDSKIKNLRSFSRGLPVVKPTWILDSVASNKLLSWVPYQLNQLVNNQPRLSEFFSMKKGPTVEKPKICLTSEKKYGTEDSLSPVAMNLKDTTLSEVNELVGYRAEMHSDSEMNLQDNADAKLNEKSSDDFEAAKLKDTSISDVDVSIEYKPQFCESFEMLPQKDADVEVQKGSSSEKYNYADEEPGIDDVGQSCEENISSFHGLSASTHNGSTNSDGSSSSMAAGSSKLQHSTLENPDFMENYFKKSRLHFIGTWRNRYYKRFPRLANGSNSVTSHINGSSHNQSATIIHVDMDCFFVSVVIRNIPKFKDRPVAVCHSDNPKGTAEISSANYPARSYGVKAGMFVRDAKALCPHLVIFPYDFKSYEGVADQFYDILHKHCEKVQAVSCDEAFLDISGTNNVDPEVLASKIRKEIFDTTGCTASAGIATNMLIARLATKTAKPDGQCYIPLEKVDDYLNPLPIKDLPGIGHAIEEKLKKRSVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGVDNRAVGLIQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRLNGCGVQGRTFTLKIKKRRKNADEPTKYMGCGDCENLSHSLTVPVATDDMEILQRIVKQLFGFFVIDVKEIRGIGLQVSKLQNVDISRQGTKRNSLDSWLSSSATTNVENVIGPSVKEVANIDNEKQSNSGTLDQLSADPISHLIQMENNRHHSEALNPVSPPPLCNLDIGVIRSLPPELFSELNEIYGGKLIDLLAKSRDKNEVFSSSIRVPSQGSGGDGLTLSDIQGNKVQSENKISREGLYNMVAPITTSGSHRIDLLPSSLSQVDPSVLQELPEPLRDDILKQLPAHRGNELSLEHAFKDHRESGSGVENTSGSVDPLMENDLWSGNPPLWVDKFKASNCLILELFAEIYTESGLPGNLYEILLRTSSQSWHPSAADSDGWDGAIYGLCELLKQYFKLKIELDIEETYVCFRLLKRLAMKSQLFSEVFNIIDPYLQGAVNEIYGGSLKVKCSQIRSATTLLYQARMNLKEEEIVGLAPLSRLPSDRYLSTRGNFWVWRKELNGAFTDQSPTPNLAFASVAQNTLAKILLQIFKSDERTPLIANAKAMLQTLFSNQNYQT* 1266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 678801 694129 + Chy1G001040.1 Chy01g00104 217285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00104 1265 MobiDBLite consensus disorder prediction 1 40 - -
Chy01g00104 1265 Gene3D - 449 503 - -
Chy01g00104 1265 MobiDBLite consensus disorder prediction 313 373 - -
Chy01g00104 1265 Gene3D - 668 791 IPR036775 GO:0003684|GO:0006281
Chy01g00104 1265 Pfam impB/mucB/samB family C-terminal domain 669 788 IPR017961 GO:0003684|GO:0006281
Chy01g00104 1265 Gene3D BRCT domain 89 185 IPR036420 -
Chy01g00104 1265 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 668 781 IPR036775 GO:0003684|GO:0006281
Chy01g00104 1265 SMART BRCT_7 95 174 IPR001357 -
Chy01g00104 1265 Pfam impB/mucB/samB family 435 582 IPR001126 GO:0006281
Chy01g00104 1265 Gene3D - 604 658 - -
Chy01g00104 1265 PANTHER DNA REPAIR PROTEIN REV1 35 1151 - -
Chy01g00104 1265 Gene3D - 432 592 IPR043128 -
Chy01g00104 1265 SUPERFAMILY BRCT domain 58 186 IPR036420 -
Chy01g00104 1265 CDD BRCT_Rev1 97 184 - -
Chy01g00104 1265 CDD PolY_Rev1 383 783 - -
Chy01g00104 1265 PIRSF REV1 33 1148 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Chy01g00104 1265 MobiDBLite consensus disorder prediction 313 328 - -
Chy01g00104 1265 Gene3D - 381 416 - -
Chy01g00104 1265 ProSiteProfiles BRCT domain profile. 93 184 IPR001357 -
Chy01g00104 1265 SUPERFAMILY DNA/RNA polymerases 425 663 IPR043502 -
Chy01g00104 1265 Pfam IMS family HHH motif 596 622 IPR024728 -
Chy01g00104 1265 MobiDBLite consensus disorder prediction 337 373 - -
Chy01g00104 1265 ProSiteProfiles UmuC domain profile. 432 613 IPR001126 GO:0006281
Chy01g00104 1265 Pfam BRCT domain, a BRCA1 C-terminus domain 95 182 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00104 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] - csv:101214381 2204.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00104 Chy-Chr1:678801 Chy01g00132 Chy-Chr1:874913 6.07E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00104 Chy_Chr01 FPKM 32.401985 34.338913 18.188828 18.191397 4.208551 3.894888 5.099334 1.329625 1.243323 1.381133