Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00109 ATGGACTCGTCGGAGTACTACAAACCATCCTTCCCAACCTCCAAGAAACGCGACTCGGAGGAACACTCTTTGCAGCAGGCTACTGCCAATAAGAGACCCGTGCTTGGCGAGATCACTAACTCGTTCATCTTCAGTTCGAGTCAGTGCTCCTTTTCTGACCAGGAGATGACGGGTAAGGATCTGGACAAGGAGGAACTCCCTGAAGTACGGTCTGTTGATTGTCCCGAGAAATCTGGCTCGTCGTTGGGCATTTATAACCACCTTCGATCTCTCGAGATGGAATTAAACATGAAGTTCCTACCCAACAACATCGAAAAGGCTCGTAATGATGATTCCGGTTCAACTTTCACTCGTTGGCGAGAAATTCTAGTGGATTGGTTAGTAGAGGTTGCTGAGGAATACAAGCTTGTATCAGACACCCTATATCTCACCATATCACATGTTGACAGATACTTATCCTGGCATGTTGTTGACAGAAGCAAGCTACAACTTCTTGGTGTTTGTTGCATGCTAATTGCATCGAAGCATGAAGAAATCAGTCCTCCACATGTTGAAGATTTCTGTTATATAACAGATAACACTTATACCAAAGAACAGGTACTGAATATGGAGAGAGAAGTACACAGATTCTTGACCTGTGAAGGCGCTCCCACCGTAAAAATTTTCCTCAGAATATTTACCAAAGTTTCTTTAGAAAATTGGAAGGCTCCAGATTTGCAATTTGAGTTGTTGTGTTGTTATCTTGCGGAGCTAAGTTTGTTAGATCACCGTTGTGCACAAATATTACCTTCACAAGTCGCTGCATCAGCCATTTTTCTTTCTAGATTCACAATCCAACCAGAGGAACATCCTTGGTGTTTAGCACTACAACGTTACTCCGGTTACAGGCCATCTGAACTAAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAAGGAAGCTCTTTACTAGCAATCAGACAGAAGTACAAGGAGAACAAGTTCAAGTGTGTGGCAGAGTTATGTTCACACTCGGAAATTCCCGTAGATTATTTTGAGGACATTGATCAGCAATCATTCAACAGCCTAAACCCTAATGTGGACCTTCTTCAAACCGACCCGAACCCGACGATCCCATTGTTCGTCAAACTGGTCGAACCGCGACGCAAGAAAGCGCAAGAAATAGAAGGAGCAGCAACCACGCCAAAGTCCTTGCGTCTTGTAATGGAGGTTGAACCAGACGAGAAGGAATTGAAAGCCGCCGGAGCTCAGCTCCTGCCTGACGGACGGCGAGGTCTCCGTATACATGGTTGGGAGATCGAGACTCACAAGCGTTCAATTCTTACCTCCTCCAATTTCGAGCAATGGGAACAGAAACTTCAAACGTCTCACTTGCCAGAGATGGTGTTCGGCGACAGTTTGTTAGCTCTCAAACATATAGAAACTGGAGTTCAAATTTATTTTAATGCCTTTGATGCTCTAACTGGGTGGAAAAAGGAAGCTCTGCCTCCTGTTGAGGTTCCTGCAGCTGCGAAATGGAAATTCAGATGCAAACCTTCGCAACAGGTGATATTGGATTATGATTATACATTTACAACACCGTACTGTGGAAGTGAAAGAATTGAAGCTGATACAGAGAAGCATGGAAGAGAGCAAACATGTGAAGAAAGCAATGGTCTCTGTTGGGAGGATTGCGAGGAGAAAATTGATTTAGTCTCACTCTCACTAAAGGAGCCTATTCTCTTTTATGATGAGGTAATCTTATATGAGGATGAGCTGGCTGACAATGGCATATCACTTTTAACTGTGAAAGTGAGAGTCATGCCAAGTGGTTGGTTTCTTCTTTTACGTTTCTGGCTTAGAGTTGATGGAGTGCTTATGAGACTGAGGGACACTCGTATGCATTGCATATTTAGCAACAGTGAAAATCCAATAATTCTTCGAGAAAGTTGCTGGAGAGAGACTACGTTTCAATCTCTTGCTGAAAAAGGATACGCGTCTGATTCTGCGGCCTATAACGATCCGAGCGTCATCTGCGACAGACTTCAGATTGTCATGCAGAAGACCCAAAAGCTTAGAGTCTCTGAGGAATTTTGGTATTCTAGGATGAACTCTATCCACATCGTCGATAAGGGTGATGCTTCTTCATTCGTCACAACTTTCATTCCAACTCCCTGGCCAAGTTATGTGCATCAACAACTCATCCTCCAAACTGCAAGAGGCAGCGGTGCCCCTCCCGATGCTGGCAGTACCATTTTCGAACCTTGCAATAGTAGCAGCAGATCCACCATGGCTATGCAGACGAAAGGAATGAGGCTGCGGACAAGTAGCAACAATAAGAGAGAGAAAATCTACTGTACTGTGCATATAGTGTGTCCTAGAACAAGCAAGACTCACAAAGTAACCACTAGCGATCTTGACAAGTACGGCAGAAGGTACCATGAGACAGCTCGCAAAAAGCCCTAA 2454 44.09 MDSSEYYKPSFPTSKKRDSEEHSLQQATANKRPVLGEITNSFIFSSSQCSFSDQEMTGKDLDKEELPEVRSVDCPEKSGSSLGIYNHLRSLEMELNMKFLPNNIEKARNDDSGSTFTRWREILVDWLVEVAEEYKLVSDTLYLTISHVDRYLSWHVVDRSKLQLLGVCCMLIASKHEEISPPHVEDFCYITDNTYTKEQVLNMEREVHRFLTCEGAPTVKIFLRIFTKVSLENWKAPDLQFELLCCYLAELSLLDHRCAQILPSQVAASAIFLSRFTIQPEEHPWCLALQRYSGYRPSELKECILAIHDLQLNRKGSSLLAIRQKYKENKFKCVAELCSHSEIPVDYFEDIDQQSFNSLNPNVDLLQTDPNPTIPLFVKLVEPRRKKAQEIEGAATTPKSLRLVMEVEPDEKELKAAGAQLLPDGRRGLRIHGWEIETHKRSILTSSNFEQWEQKLQTSHLPEMVFGDSLLALKHIETGVQIYFNAFDALTGWKKEALPPVEVPAAAKWKFRCKPSQQVILDYDYTFTTPYCGSERIEADTEKHGREQTCEESNGLCWEDCEEKIDLVSLSLKEPILFYDEVILYEDELADNGISLLTVKVRVMPSGWFLLLRFWLRVDGVLMRLRDTRMHCIFSNSENPIILRESCWRETTFQSLAEKGYASDSAAYNDPSVICDRLQIVMQKTQKLRVSEEFWYSRMNSIHIVDKGDASSFVTTFIPTPWPSYVHQQLILQTARGSGAPPDAGSTIFEPCNSSSRSTMAMQTKGMRLRTSSNNKREKIYCTVHIVCPRTSKTHKVTTSDLDKYGRRYHETARKKP* 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 706935 725648 - Chy1G001090.1 Chy01g00109 217290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00109 817 Pfam Cyclin, C-terminal domain 217 338 IPR004367 -
Chy01g00109 817 Pfam TIP41-like family 464 656 IPR007303 GO:0043666
Chy01g00109 817 Gene3D - 84 336 - -
Chy01g00109 817 PANTHER CYCLINS 27 350 IPR039361 -
Chy01g00109 817 MobiDBLite consensus disorder prediction 1 31 - -
Chy01g00109 817 MobiDBLite consensus disorder prediction 11 25 - -
Chy01g00109 817 CDD CYCLIN 120 208 IPR013763 -
Chy01g00109 817 PANTHER CYCLIN-A3-1-LIKE 27 350 - -
Chy01g00109 817 SUPERFAMILY Cyclin-like 217 339 IPR036915 -
Chy01g00109 817 Pfam Cyclin, N-terminal domain 92 211 IPR006671 -
Chy01g00109 817 Gene3D - 97 215 - -
Chy01g00109 817 SUPERFAMILY Cyclin-like 107 212 IPR036915 -
Chy01g00109 817 SMART Cyclin_C_2 217 340 IPR004367 -
Chy01g00109 817 CDD CYCLIN 217 308 IPR013763 -
Chy01g00109 817 SMART cyclin_7 221 309 IPR013763 -
Chy01g00109 817 SMART cyclin_7 125 209 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00109 Chy-Chr1:706935 Chy01g02038 Chy-Chr1:25216266 7.55E-72 dispersed
Chy01g00109 Chy-Chr1:706935 Chy03g01569 Chy-Chr3:17814419 1.21E-99 wgd
Chy01g00109 Chy-Chr1:706935 Chy07g00171 Chy-Chr7:1422202 3.23E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00109 K17607 K06627 csv:101213896 691.804