Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00127 ATGGCGACTTCTTCACTCTTCCATCTCTCTGCTCCGCCGTCGTTAGCCATCGGCAGCTCAAAGTCGTCTTTCCTCTTTGGTACCCAGCTGCCTTTACCTACCTCTTGTTCGAGAATCTCACGTCGCAGATATGTCCTATCTCCCCATGCCCAACAATCCATGGACCACATTCCTAAGCAGTTTAGAGAAGAGAATCTCAAAGATGGATTGATTGAGAACTACAAGAATGTTCCTCAGTATCTTTATGGCCTTACGCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCCGTGCAGCGACAGTCAGAATTAGTTACTGAGGAAAAGATATCATCTGCCTACAACTACTTGAATCATGGAGGAATGTGGAGTCTAACTGGCATGGATGGGAAGGGTCCAGATAAATATAGTATGAGCGTTAACATGTATCGTGGGGGAGGAGGTGGACGACCTCGATCATCTCCTCCTGATTTGCCCACTTTGCTCTTAGATGCTCGAATAATCTATTTGGGCATGCCTATTGTACCGGCAGTGACCGAGCTTATTGTTGCTCAGTTTATGTGGCTAGATTATGACAACCCGACAAAGCCCATATATCTCTACATAAACTCTTCTGGGACTCAGGATGAGAATAGGGAGCTTGTTGGATCTGAAACTGAAGCATATGCTATTGCAGATATGATGTCTTACTGCAAATCGGATGTCTATACCATTAACATTGCGATGGCATATGGTCAAGCGGCAATGCTTTTGTCACTTGGAACCAAGGGTTACCGTGCTCTCCAGCCTAACGCTTCCACTAAACTATATCTCCCTAAAGTAAATAATTCAAGTGGGTCGGCCATAGATATGTGGATTAAGGCTAAAGAACTCGATGCCAACACCGAGTACTATCTTGAGCTACTAGCTAAAGGAATTGGTAAGCCCAAGGAAGAGATTAATAAAGATATCCAACTATCCAAATACTTCAAACCACAAGAAGCTATTGACTACGGCATTGCAGACAAGATTATCAAACCTGAAGATCCTGCCTATGAAAAAAAGCACAGTTCTAACACCACTTTTACAATCAGAATTACGATGAGATGCTTGCACAGTCGAAAGCTGCGAATGCGAGGAGAGGACGAGGAGTCAATCCACAAGCGGCGCCAACTGGGTCCAGCCACGAAGTTGTATTGTTTTGTTCATAAGGTTCCCGTATGTGGAGAATGCATTTGTTTCCCGGAACACCAAATATGCGTGGTTCGTACCTATTCAGAGTGGGTATTGAATGGAGAATATGATTGGCCTCCAAATTGCTGCCTGTGCCATGCTACACTCGTGGAAGGAGTTGGTCCTCAAACTACTCGATTGGGATGTTTGCATGTCATACATACGGATTGCCTGGTCTCACATATCAAGAGCTTTCCTCCATCCACTGCCCCTGCTGGATATGACTGTCCTGCTTGTTCTGTTTCGATATGGCCTCCAAAGAACTTTAAAGATTCAGGATCTCGTCTACACGCAAAGCTAAAGGAAGCTATCTTGCAGACTGGACTGGAAAAGAATTTGTTTGGAAATCATCCAGTTGGATTTTCACCAACAGAATCCCACGGTCCTCCCCCTGCCTTTGCCTCGGATCCCTTGGTTTCAACTTCAGCAGATACACATAACAATAAGAGTTCATTAAATTCAGTAGCAAAGATTGAGTCAAATCTGGGTGAAGGGTACTCTGCCACAACTGGAACGGGGTCTTCCAAAAATAATGTTGCAGATATTGTAGAGATTGAAATGCCTGGTTCAGAAGGAAATTTTGTCAAATCCTCAAGTCCTTCAGGCCCTGTTGCTACCACAAGAAAAGGTGCAGTCAGTTATGACAGGCAAAATTCTGAAATTTCATATTATGCTGACGATGAAGATGGAAATCGTAAGAAGTATGTTAGAAGAGGTCCTTTTAAGCACAAGTTTCTTAGAGCACTGCTTCCTTTCTGGTCAACTGCATTGCCAACTCTACCTGTCACTGCACCTCCTCGTAAAGATGCACCGAATGCCAATGATGTTAATGAAGGTCGTGTCCGGCACCAAAGACCCTCCAGAATGGATCCAAGAAAAATTCTTCTTATCATAGCAATCATGGCTTGCCTGGCAACAATGGGTATTTTGTACTACAGACTTGTACAAAGAGACATGGGAGAAGAATTTGTGGATGACGAGCAGCAACTGCAAGCAGCACAATGA 2220 44.01 MATSSLFHLSAPPSLAIGSSKSSFLFGTQLPLPTSCSRISRRRYVLSPHAQQSMDHIPKQFREENLKDGLIENYKNVPQYLYGLTPSQMDMFMTEDNPVQRQSELVTEEKISSAYNYLNHGGMWSLTGMDGKGPDKYSMSVNMYRGGGGGRPRSSPPDLPTLLLDARIIYLGMPIVPAVTELIVAQFMWLDYDNPTKPIYLYINSSGTQDENRELVGSETEAYAIADMMSYCKSDVYTINIAMAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLELLAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKHSSNTTFTIRITMRCLHSRKLRMRGEDEESIHKRRQLGPATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVLNGEYDWPPNCCLCHATLVEGVGPQTTRLGCLHVIHTDCLVSHIKSFPPSTAPAGYDCPACSVSIWPPKNFKDSGSRLHAKLKEAILQTGLEKNLFGNHPVGFSPTESHGPPPAFASDPLVSTSADTHNNKSSLNSVAKIESNLGEGYSATTGTGSSKNNVADIVEIEMPGSEGNFVKSSSPSGPVATTRKGAVSYDRQNSEISYYADDEDGNRKKYVRRGPFKHKFLRALLPFWSTALPTLPVTAPPRKDAPNANDVNEGRVRHQRPSRMDPRKILLIIAIMACLATMGILYYRLVQRDMGEEFVDDEQQLQAAQ* 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 822147 834265 + Chy1G001270.1 Chy01g00127 217308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00127 739 Pfam Clp protease 161 341 IPR023562 -
Chy01g00127 739 CDD S14_ClpP_2 158 338 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy01g00127 739 MobiDBLite consensus disorder prediction 521 554 - -
Chy01g00127 739 PRINTS Clp protease catalytic subunit P signature 238 255 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy01g00127 739 PRINTS Clp protease catalytic subunit P signature 198 218 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy01g00127 739 PRINTS Clp protease catalytic subunit P signature 317 336 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy01g00127 739 PRINTS Clp protease catalytic subunit P signature 158 173 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy01g00127 739 ProSiteProfiles Zinc finger RING-type profile. 434 485 IPR001841 -
Chy01g00127 739 Coils Coil 728 739 - -
Chy01g00127 739 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 46 354 IPR023562 -
Chy01g00127 739 SUPERFAMILY ClpP/crotonase 155 343 IPR029045 -
Chy01g00127 739 CDD Bbox2 379 412 - -
Chy01g00127 739 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 46 354 - -
Chy01g00127 739 MobiDBLite consensus disorder prediction 595 617 - -
Chy01g00127 739 MobiDBLite consensus disorder prediction 668 690 - -
Chy01g00127 739 Gene3D - 140 344 - -
Chy01g00127 739 MobiDBLite consensus disorder prediction 597 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00127 - - - csv:101215656 716.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00127 Chy-Chr1:822147 Chy06g02092 Chy-Chr6:25108482 1.62E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g697 . . . . . . . . Cmo19g00569 Cmo11g01418 . . . . . Cpe04g00325 Cpe15g00443 Bhi05g01042 . . . . . . Cla02g00678 Cam02g0711 Cec02g0724 Cco02g0746 Clacu02g0720 Cmu02g0717 Cre02g1030 Cone12ag1049 Cone8ag1081 . . Lsi03g00572 Csa07g00688 . Cme01g00117 . . . . . . . . . . . . Cma19g00556 Car11g01141 Car19g00414 . . . . . . . . . . . . . . . . . . Chy01g00127 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008279 1 1 2 3 1 0 2 1 0 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00127 Chy_Chr01 FPKM 4.399073 3.871761 1.735718 1.56798 2.176081 1.471361 0.0 2.118665 0.0 2.019444