Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00128 ATGGCTCAATTACTCTTCAACACCAAAGCTAATTCCCCACCTGATCCTTTCATGGCTACCCTTTCTTATGATCAAACACCTTCTTCTTCAACCTTTAATTGTAGCCTTTCACAAGAGAGTAGTGATGAATTATTATTCCCTAACAATAATCATTATTATTATTGCAATCCAATGAATAATAGCAATAGTAGTAATTATTTTTCAATATTGGGAGAGCTTGGAACTTATTACAGTAACAATAATAATGGGAGTAATTTCCATGTTCAAGTTCCTGAGGACTCTATGAATGTAGAGGTGAGTGAGAATAATTTGCAGCTGCCTTGTTTTGAAGAAGCTGAGTTGATAAAATTACCTGAAGAAGAAGCTGCTCATTATCAAATTGATCAGATTAATTGCAAGAAAAGATCAAGAGGAGAATTTGGGGATGATCATGTAGAAAAGGGGAGGAATGAGAAGCCAAAGAAAACTCAAAAGCTTACCTCAAGCACCAACAGTACTGAAGAAGATGGCAATGCTGGCCCTAGCAGGCAAAGCACAAGCACTTACTGCTCGGAAGACGAATCCAATGCCTCTCTCGATCGAAACGGTAGAGCTAATAACTCCGGATCATGTCTGAATGGGGCGAACAAATCCCGAGCCAGCAGAGGCTCAGCCACAGACCCTCAGAGCCTTTATGCAAGAAAGAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAGCCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATACGTGAAGTTTCTACAACTCCAAATCAAGCTACTAAGCTCTGATGACTTATGGATGTACGCTCCAATTGCTTACAACGGAATGGATATCGGACTTAATCCGACGACCCCAAAAACAACAAAAGAGAAAGAATTATGA 921 39.74 MAQLLFNTKANSPPDPFMATLSYDQTPSSSTFNCSLSQESSDELLFPNNNHYYYCNPMNNSNSSNYFSILGELGTYYSNNNNGSNFHVQVPEDSMNVEVSENNLQLPCFEEAELIKLPEEEAAHYQIDQINCKKRSRGEFGDDHVEKGRNEKPKKTQKLTSSTNSTEEDGNAGPSRQSTSTYCSEDESNASLDRNGRANNSGSCLNGANKSRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTTKEKEL* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 848554 850650 + Chy1G001280.1 Chy01g00128 217309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00128 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 217 283 IPR036638 GO:0046983
Chy01g00128 306 MobiDBLite consensus disorder prediction 137 156 - -
Chy01g00128 306 Pfam Helix-loop-helix DNA-binding domain 227 267 IPR011598 GO:0046983
Chy01g00128 306 SMART finulus 223 272 IPR011598 GO:0046983
Chy01g00128 306 MobiDBLite consensus disorder prediction 137 229 - -
Chy01g00128 306 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 10 294 - -
Chy01g00128 306 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 294 - -
Chy01g00128 306 MobiDBLite consensus disorder prediction 157 221 - -
Chy01g00128 306 Gene3D - 219 275 IPR036638 GO:0046983
Chy01g00128 306 CDD bHLH_AtIND_like 218 280 - -
Chy01g00128 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00128 Chy-Chr1:848554 Chy02g02104 Chy-Chr2:25359984 8.20E-21 dispersed
Chy09g00499 Chy-Chr9:4851121 Chy01g00128 Chy-Chr1:848554 4.45E-26 transposed
Chy01g00128 Chy-Chr1:848554 Chy03g01587 Chy-Chr3:17898667 4.23E-55 wgd
Chy01g00128 Chy-Chr1:848554 Chy07g00184 Chy-Chr7:1509735 1.79E-52 wgd
Chy01g00128 Chy-Chr1:848554 Chy07g01715 Chy-Chr7:20896769 1.06E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17242 PF00010 HLH 6.10E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00128 - - csv:101212933 507.294