Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00134 ATGGAATTATCCCTGATTGGGCTTCAGAATGCTGGAAAAACATCACTTGTAAATGTTATTGCAACGGGTGGATATAGTGAAGATATGATCCCAACGGTAGGATTTAACATGAAGAAGGTGACAAAAGGAAATGTAACAATAAAGCTTTGGGATCTTGGAGGCCAACCAAGGTTCCGTAGCATGTGGGAAAGATATTGTCGTGCAGTTTCTGCCATTGTTTATGTTGTGGATGCCGCTGATTACGAGAACTTGTCTGTTTCAAGAAGTGAGCTTCATGACTTGTTGAGTAAGCCTTCACTTAATGGAATTCCATTGCTGGTGTTGGGTAACAAGATTGACAAACAAGGAGCTCTGTCTAAGTCGGATCTCACAGAACGAATGGGACTCAAGTCTATAACTGATAGAGAAGTCTGTTGCTATATGATTTCCTGCAAGAATTCAACCAATATCGATACGGTCATTGATTGGCTCGTAAAGCATTCAAAGTCGAAAAATTAA 498 40.16 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMKKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYENLSVSRSELHDLLSKPSLNGIPLLVLGNKIDKQGALSKSDLTERMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKN* 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 897329 898699 + Chy1G001340.1 Chy01g00134 217315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00134 165 CDD Arl10_like 2 160 IPR044154 GO:0003924|GO:0005525|GO:0015031
Chy01g00134 165 ProSiteProfiles small GTPase Rab1 family profile. 1 165 - -
Chy01g00134 165 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 165 - -
Chy01g00134 165 ProSiteProfiles small GTPase Arf family profile. 1 161 - -
Chy01g00134 165 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8A 1 165 - -
Chy01g00134 165 SMART arf_sub_2 1 165 - -
Chy01g00134 165 Pfam ADP-ribosylation factor family 4 159 IPR006689 GO:0003924|GO:0005525
Chy01g00134 165 SMART sar_sub_1 1 161 IPR006689 GO:0003924|GO:0005525
Chy01g00134 165 PRINTS GTP-binding SAR1 protein signature 2 25 IPR006689 GO:0003924|GO:0005525
Chy01g00134 165 PRINTS GTP-binding SAR1 protein signature 58 83 IPR006689 GO:0003924|GO:0005525
Chy01g00134 165 PRINTS GTP-binding SAR1 protein signature 103 124 IPR006689 GO:0003924|GO:0005525
Chy01g00134 165 SMART rab_sub_5 1 164 - -
Chy01g00134 165 Gene3D - 1 165 IPR027417 -
Chy01g00134 165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 163 IPR027417 -
Chy01g00134 165 TIGRFAM small_GTP: small GTP-binding protein domain 3 157 IPR005225 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00134 K07955 ARL8; ADP-ribosylation factor-like protein 8 - csv:101214940 332.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00134 Chy-Chr1:897329 Chy09g00481 Chy-Chr9:4539939 7.23E-95 dispersed
Chy10g00890 Chy-Chr10:14677134 Chy01g00134 Chy-Chr1:897329 2.61E-07 dispersed
Chy01g00134 Chy-Chr1:897329 Chy02g00888 Chy-Chr2:5735336 1.92E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g718 . . . Bda08g00681 . . . . Cmo19g00562 Cmo11g01421 . . . . . Cpe04g00328 Cpe15g00435 . . . . . . . Cla02g00686 Cam02g0719 Cec02g0732 Cco02g0754 Clacu02g0729 Cmu02g0727 Cre02g1038 . Cone8ag1075 . Cone10ag1049 Lsi03g00582 Csa07g00680 . Cme01g00124 . . . . . . . . . . . Cma11g01699 Cma19g00548 Car11g01144 Car19g00406 . . . . . . . . . . . . . . . . . . Chy01g00134 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000951 4 4 4 7 6 2 3 2 2 2 1 2 2 2 2 2 2 5 3 2 2 3 2 2 2 1 2 5 4 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00134 Chy_Chr01 FPKM 25.590395 35.058102 26.492626 26.472383 10.717983 6.536267 10.495931 61.608475 61.432846 65.55378